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Author SHA1 Message Date
b94643d36b Merge branch 'master' into develop
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2024-11-14 21:20:33 +00:00
59f007873c Publish CI step no longer fails build if push is failed
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2024-11-14 21:18:56 +00:00
6de659df58 Added kubernetes selector.
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2024-11-14 21:09:53 +00:00
bf357a5524 Updated CI config to mirror serverside config
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2024-11-14 21:06:14 +00:00
1b08cee027 Bumped version number
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ydeng/filterfasta/pipeline/head This commit looks good
2023-07-25 15:56:35 +00:00
c9bc645cc3 Updated pipeline to take advantage of new build container image
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ydeng/filterfasta/pipeline/head Something is wrong with the build of this commit
2023-05-03 08:34:50 -05:00
5 changed files with 39 additions and 12 deletions

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@ -0,0 +1,22 @@
// For format details, see https://aka.ms/devcontainer.json. For config options, see the
// README at: https://github.com/devcontainers/templates/tree/main/src/python
{
"name": "Python 3",
// Or use a Dockerfile or Docker Compose file. More info: https://containers.dev/guide/dockerfile
"image": "mcr.microsoft.com/devcontainers/python:1-3.12-bullseye"
// Features to add to the dev container. More info: https://containers.dev/features.
// "features": {},
// Use 'forwardPorts' to make a list of ports inside the container available locally.
// "forwardPorts": [],
// Use 'postCreateCommand' to run commands after the container is created.
// "postCreateCommand": "pip3 install --user -r requirements.txt",
// Configure tool-specific properties.
// "customizations": {},
// Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root.
// "remoteUser": "root"
}

22
Jenkinsfile vendored
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@ -1,15 +1,15 @@
pipeline {
agent any
stages {
stage("clean") {
steps {
sh 'rm -rf ./dist/*'
}
agent {
kubernetes {
cloud 'rsys-devel'
defaultContainer 'pip'
inheritFrom 'pip'
}
}
stages {
stage("install") {
steps {
sh 'mamba env update --file environment.yml'
sh 'echo "mamba activate filterfasta" >> ~/.bashrc'
sh 'pip install -r requirements.txt'
}
}
stage("build") {
@ -25,7 +25,7 @@ pipeline {
}
stage("archive") {
steps {
archiveArtifacts artifacts: 'dist/*.tar.gz, dist/*.whl'
archiveArtifacts artifacts: 'dist/*.tar.gz, dist/*.whl', fingerprint: true, followSymlinks: false, onlyIfSuccessful: true
}
}
stage("publish") {
@ -33,8 +33,8 @@ pipeline {
branch '**/master'
}
steps {
withCredentials([usernamePassword(credentialsId: 'rs-git-package-registry-ydeng', passwordVariable: 'PASS', usernameVariable: 'USER')]) {
sh "python -m twine upload --repository-url https://git.reslate.systems/api/packages/${USER}/pypi -u ${USER} -p ${PASS} --non-interactive --disable-progress-bar --verbose dist/*"
withCredentials([usernamePassword(credentialsId: '4d6f64be-d26d-4f95-8de3-b6a9b0beb311', passwordVariable: 'PASS', usernameVariable: 'USER')]) {
sh returnStdout: true, script: "python -m twine upload --repository-url https://git.reslate.systems/api/packages/${USER}/pypi -u ${USER} -p ${PASS} --non-interactive --disable-progress-bar --verbose dist/*"
}
}
}

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@ -7,3 +7,4 @@ dependencies:
- twine=4
- biopython=1.81
- python=3.11
prefix: ./env

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@ -1 +1,5 @@
Bio==1.5.6
build
pytest
twine
biopython==1.81

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@ -1,6 +1,6 @@
[metadata]
name = filterfasta
version = 0.0.2
version = 0.0.3
[options]
packages = filterfasta