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BMLSA

A Basic multi local sequence alignment tool using the Biopython implementation of the Smith-Waterman alignment algorithm.

Features

  • Aligns a CSV of short sequences locally to a given reference sequence
  • Outputs in a CSV with old and new positions
  • Selectable parameters for alignment
  • Compatible with broad-range of input CSV formats
  • Automatically align with all sequences in reference FASTA
  • All produced output is human readable!

More Information

For all live downloadable artifacts, build statuses, unit test results, and documentation, check out the continuous integration page for the master branch (development branch).