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Removed bad parameter

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This commit is contained in:
Harrison Deng 2023-04-20 15:16:34 -05:00
parent 04f730cacb
commit 7f9f9405c3
1 changed files with 1 additions and 1 deletions
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bmlsa/aligner.py
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@ -6,7 +6,7 @@ from datatypes import AlignedSequence
def protein_align_many_to_one_ssw(sequence: str, queries: dict[str, AlignedSequence]): def protein_align_many_to_one_ssw(sequence: str, queries: dict[str, AlignedSequence]):
annotation_pairs = {} annotation_pairs = {}
aligner = PairwiseAligner(one_alignment_only=True) aligner = PairwiseAligner()
aligner.mode = "local" aligner.mode = "local"
aligner.substitution_matrix = substitution_matrices.load("BLOSUM62") aligner.substitution_matrix = substitution_matrices.load("BLOSUM62")
aligner.extend_gap_score = -1 aligner.extend_gap_score = -1