From 7f9f9405c3231807dacd3d63d28481ad0f5c6c32 Mon Sep 17 00:00:00 2001
From: Harrison <yunyangdeng@gmail.com>
Date: Thu, 20 Apr 2023 15:16:34 -0500
Subject: [PATCH] Removed bad parameter

---
 bmlsa/aligner.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/bmlsa/aligner.py b/bmlsa/aligner.py
index eaeb509..f85df25 100644
--- a/bmlsa/aligner.py
+++ b/bmlsa/aligner.py
@@ -6,7 +6,7 @@ from datatypes import AlignedSequence
 
 def protein_align_many_to_one_ssw(sequence: str, queries: dict[str, AlignedSequence]):
     annotation_pairs = {}
-    aligner = PairwiseAligner(one_alignment_only=True)
+    aligner = PairwiseAligner()
     aligner.mode = "local"
     aligner.substitution_matrix = substitution_matrices.load("BLOSUM62")
     aligner.extend_gap_score = -1