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Harrison Deng a122055939 Moved work into separate file.
2021-10-27 02:35:08 -04:00
data
Update MYSPE datasets
2021-09-18 12:36:26 -04:00
myScripts
Moved work into separate file.
2021-10-27 02:35:08 -04:00
scripts
New retrieval logic
2021-09-18 12:36:46 -04:00
tests
New unit: RPR-Unit_tests, with sample test file and tests directory
2017-10-15 18:46:42 -04:00
.gitignore
.gitignore no longer ignores myScripts directory.
2021-10-27 02:27:17 -04:00
.notes
cleanup
2019-01-07 17:51:50 +10:00
.Rprofile
Add troubleshooting hints via errText[[...]]
2021-10-04 22:53:06 +02:00
.tmp.R
New workflow for Introduction
2020-09-19 22:31:06 +10:00
.utilities.R
rewrite getMYSPE()
2021-09-18 12:00:51 -04:00
2021-10-12_In-Class_exploration.R
Class session notes for 2021-10-12
2021-10-19 22:44:34 +02:00
ABC-addSACCE_APSESproteins.R
Added and updated learning units
2017-09-12 16:09:20 -04:00
ABC-Install_all_packages.R
New script
2021-10-12 12:17:12 +02:00
ABC-units.R
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
ABC-units.Rproj
Install files and folders
2017-08-18 22:04:01 +02:00
BIN-ALI-BLAST.R
Removed 2021 Update warning
2021-10-26 17:04:31 +02:00
BIN-ALI-Dotplot.R
Removed 2021 Update warning
2021-10-26 17:04:31 +02:00
BIN-ALI-MSA.R
Removed 2021 Update warning
2021-10-26 17:04:31 +02:00
BIN-ALI-Optimal_sequence_alignment.R
Removed 2021 Update warning
2021-10-26 17:04:31 +02:00
BIN-ALI-Similarity.R
specify package when attaching BLOSUM62 - don't assume Biostrings has been loaded.
2020-10-02 20:59:29 +10:00
BIN-Data_integration.R
Updates to UniProtIDmap, and address httr/curl initialization bug
2020-09-25 02:27:42 +10:00
BIN-FUNC-Domain_annotation.R
Removed 2021 Update warning
2021-10-26 17:04:31 +02:00
BIN-FUNC-Semantic_similarity.R
Maintenance
2020-09-25 13:20:10 +10:00
BIN-MYSPE.R
Add troubleshooting hints via errText[[...]]
2021-10-04 22:53:06 +02:00
BIN-PHYLO-Data_preparation.R
Maintenance
2020-09-26 16:45:29 +10:00
BIN-PHYLO-Tree_analysis.R
Deprecate iTol and use taxize:: instead. Rewrite of tip re-ordering.
2020-09-26 21:39:18 +10:00
BIN-PHYLO-Tree_building.R
add TOC
2020-09-26 18:22:32 +10:00
BIN-PPI-Analysis.R
typo
2021-09-15 20:12:10 -04:00
BIN-SEQA-Composition.R
Maintenance. Use AACOLS.
2020-09-25 01:50:07 +10:00
BIN-Sequence.R
Maintenace, and add a Fibonacci-sequence example
2020-09-23 23:21:46 +10:00
BIN-Storing_data.R
Moved work into separate file.
2021-10-27 02:35:08 -04:00
FND-Genetic_code.R
Maintenance
2020-09-24 08:55:14 +10:00
FND-MAT-Graphs_and_networks.R
Maintenance
2020-09-23 13:00:38 +10:00
FND-STA-Information_theory.R
Removed 2021 Update warning
2021-10-26 17:04:31 +02:00
FND-STA-Probability_distribution.R
Revert to canonical install.packages("name") idiom
2021-10-12 12:17:53 +02:00
FND-STA-Significance.R
RNG seems to have changed - update a number
2021-09-16 01:05:34 -04:00
functionTemplate.R
Add a line for example usage
2021-09-16 00:53:52 -04:00
plottingReference.R
First minor updates 2021
2021-09-16 00:54:29 -04:00
README.md
2020 updates - deactivate for maintenance
2020-09-18 21:56:30 +10:00
RPR-Biostrings.R
Maintenance
2020-09-24 20:41:10 +10:00
RPR-ChimeraX_remote.R
Small 2021 Updates
2021-09-16 00:52:14 -04:00
RPR-eUtils_XML.R
Minor 2021 Maintenance
2021-09-16 00:53:23 -04:00
RPR-FASTA.R
style update
2021-09-15 20:54:29 -04:00
RPR-Genetic_code_optimality.R
Maintenance
2020-09-24 22:15:28 +10:00
RPR-GEO2R.R
Removed 2021 Update warning
2021-10-26 17:04:31 +02:00
RPR-Introduction.R
New workflow for Introduction
2020-09-19 22:31:06 +10:00
RPR-Pipe.R
Typos
2021-10-05 23:48:34 +02:00
RPR-PROSITE_POST.R
bugfix in dbFetchPrositeFeatures(); add return of actual motif sequence; stylistic updates
2020-09-25 11:29:28 +10:00
RPR-RegEx.R
2020 Maintenance
2020-09-22 21:02:13 +10:00
RPR-SX-PDB.R
Removed lock-out message
2020-10-14 06:18:07 +10:00
RPR-UniProt_GET.R
updates; vectorized dbFetchUniProtSeq()
2020-09-25 10:47:41 +10:00
RPR-Unit_testing.R
Discuss code-local testing
2020-09-25 00:25:15 +10:00
scriptTemplate.R
Use requireNamespace(), <package>::<function>() idiom,
2019-01-08 17:11:25 +10:00

README.md

ABC-units

A Bioinformatics Course: R modules for learning units

Follow the instructions in the learning unit to install your local copy of this R-project.

Description
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Readme 7.6 MiB
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