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bugfix (old code carryover)

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hyginn 2017-10-30 17:24:09 -04:00
parent 373da689df
commit d3c42da51b
1 changed files with 6 additions and 4 deletions
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10
BIN-ALI-Optimal_sequence_alignment.R
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@ -3,12 +3,14 @@
# Purpose: A Bioinformatics Course:
# R code accompanying the BIN-ALI-Optimal_sequence_alignment unit.
#
# Version: 0.1
# Version: 1.0.1
#
# Date: 2017 08 28
# Date: 2017 09 - 2017 10
# Author: Boris Steipe (boris.steipe@utoronto.ca)
#
# Versions:
# 1.0.1 bugfix
# 1.0 First 2017 live version.
# 0.1 First code copied from 2016 material.
#
# TODO:
@ -171,8 +173,8 @@ percentID(ali2)
(fanID <- myDB$annotation$ID[myDB$annotation$proteinID == proID &
myDB$annotation$featureID == ftrID])
myDB$proteinAnnotation[myDB$proteinAnnotation$protein.ID == proID &
myDB$proteinAnnotation$feature.ID == ftrID, ]
myDB$annotation[myDB$annotation$ID == proID &
myDB$annotation$ID == ftrID, ]
# The annotation record contains the start and end coordinates which we can use
# to define the APSES domain sequence with a substr() expression.