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File should be in ./myScripts/...

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hyginn 2020-10-02 18:31:06 +10:00
parent e974fbdb10
commit 5ff4b3f7cb
1 changed files with 5 additions and 5 deletions
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10
BIN-ALI-Optimal_sequence_alignment.R
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@ -9,7 +9,7 @@
# Author: Boris Steipe (boris.steipe@utoronto.ca) # Author: Boris Steipe (boris.steipe@utoronto.ca)
# #
# Versions: # Versions:
# 1.7.1 add jsonlite:: to fromjJSON() in code sample # 1.7.1 add jsonlite:: to fromjJSON() in code sample and ./myScripts/
# 1.7 2020 updates # 1.7 2020 updates
# 1.6 Maintenance # 1.6 Maintenance
# 1.5 Change from require() to requireNamespace(), # 1.5 Change from require() to requireNamespace(),
@ -37,7 +37,7 @@
#TOC> ========================================================================== #TOC> ==========================================================================
#TOC> #TOC>
#TOC> Section Title Line #TOC> Section Title Line
#TOC> -------------------------------------------------------------------------- #TOC> --------------------------------------------------------------------------
#TOC> 1 Prepare 57 #TOC> 1 Prepare 57
@ -50,7 +50,7 @@
#TOC> 4.1.1 If you HAVE NOT done the BIN-FUNC-Annotation unit 268 #TOC> 4.1.1 If you HAVE NOT done the BIN-FUNC-Annotation unit 268
#TOC> 4.1.2 If you HAVE done the BIN-FUNC-Annotation unit 313 #TOC> 4.1.2 If you HAVE done the BIN-FUNC-Annotation unit 313
#TOC> 4.2 Execute and Validate 337 #TOC> 4.2 Execute and Validate 337
#TOC> #TOC>
#TOC> ========================================================================== #TOC> ==========================================================================
@ -302,7 +302,7 @@ aliApses@subject@range@start + aliApses@subject@range@width - 1
# RStudio editor, and add the following command at the end: # RStudio editor, and add the following command at the end:
# #
# myDB <- dbAddAnnotation(myDB, # myDB <- dbAddAnnotation(myDB,
# jsonlite::fromJSON("<MYSPE>-Annotations.json")) # jsonlite::fromJSON("./myScripts/<MYSPE>-Annotations.json"))
# ^^^^^^^ # ^^^^^^^
# edit this! # edit this!
# - save and close the file. # - save and close the file.
@ -310,7 +310,7 @@ aliApses@subject@range@start + aliApses@subject@range@width - 1
# Then SKIP the next section. # Then SKIP the next section.
# #
# #
# === 4.1.2 If you HAVE done the BIN-FUNC-Annotation unit # === 4.1.2 If you HAVE done the BIN-FUNC-Annotation unit
# #
# #
# You DO already have a file called "<MYSPE>-Annotations.json" in the # You DO already have a file called "<MYSPE>-Annotations.json" in the