48 lines
1.5 KiB
Plaintext
48 lines
1.5 KiB
Plaintext
|
SGD_features.tab
|
||
|
|
|
||
|
|
The latest version of the SGD_features.tab file is based on Genome Version R64-2-1.
|
||
|
|
|
||
|
|
The SGD_features.tab file is updated weekly (Saturday).
|
||
|
|
|
||
|
|
NOTE: On 4 September 2004, the SGD_features.tab file replaced the previously
|
||
|
|
used chromosomal_feature.tab file.
|
||
|
|
|
||
|
|
File contents:
|
||
|
|
|
||
|
|
1. Information on current chromosomal features in SGD, including Dubious ORFs.
|
||
|
|
Also contains coordinates of intron, exons, and other subfeatures that are located
|
||
|
|
within a chromosomal feature.
|
||
|
|
|
||
|
|
2. The relationship between subfeatures and the feature in which they
|
||
|
|
are located is identified by the feature name in column #7 (parent
|
||
|
|
feature). For example, the parent feature of the intron found in
|
||
|
|
ACT1/YFL039C will be YFL039C. The parent feature of YFL039C is
|
||
|
|
chromosome 6.
|
||
|
|
|
||
|
|
3. The coordinates of all features are in chromosomal coordinates.
|
||
|
|
|
||
|
|
|
||
|
|
Columns within SGD_features.tab:
|
||
|
|
|
||
|
|
1. Primary SGDID (mandatory)
|
||
|
|
2. Feature type (mandatory)
|
||
|
|
3. Feature qualifier (optional)
|
||
|
|
4. Feature name (optional)
|
||
|
|
5. Standard gene name (optional)
|
||
|
|
6. Alias (optional, multiples separated by |)
|
||
|
|
7. Parent feature name (optional)
|
||
|
|
8. Secondary SGDID (optional, multiples separated by |)
|
||
|
|
9. Chromosome (optional)
|
||
|
|
10. Start_coordinate (optional)
|
||
|
|
11. Stop_coordinate (optional)
|
||
|
|
12. Strand (optional)
|
||
|
|
13. Genetic position (optional)
|
||
|
|
14. Coordinate version (optional)
|
||
|
|
15. Sequence version (optional)
|
||
|
|
16. Description (optional)
|
||
|
|
|
||
|
|
Note that "chromosome 17" is the mitochondrial chromosome.
|
||
|
|
|
||
|
|
The SGD_features.tab file is complemented by GFF3 file saccharomyces_cerevisiae.gff
|
||
|
|
|