ydeng/autoBIGS.galaxy
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base: ydeng:4da6fa6f1558e467059cd9650a50535c7bff23a4
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ydeng:develop
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compare: ydeng:cac100d0acb005b4f24943efb910592739927961
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ydeng:develop
ydeng:main

2 Commits
4da6fa6f15 ... cac100d0ac

Author SHA1 Message Date
Harrison Deng
cac100d0ac .gitignore updated 2025-02-18 21:29:50 +00:00
Harrison Deng
fe43e93576 Added CSV output filtering 2025-02-18 21:26:56 +00:00
2 changed files with 8 additions and 4 deletions
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2
.gitignore vendored
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@ -1,2 +1,2 @@
autobigs-cli_test_report.html
galaxy-server/*
galaxy-server/**

8
autobigs-cli.xml
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@ -1,7 +1,7 @@
<tool id="autobigs-cli" name="AutoBIGS.CLI" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
<description>Automated MLST typing from PubMLST and InstitutPasteur.</description>
<macros>
<token name="@TOOL_VERSION@">0.4.2</token>
<token name="@TOOL_VERSION@">0.4.3</token>
<token name="@VERSION_SUFFIX@">0</token>
<import>autobigs-cli_macros.xml</import>
<expand macro="bio_tools"/>
@ -35,7 +35,9 @@
<option value="databases"/>
</param>
<when value="schema">
<repeat name="schemas" title="Schemas">
<param name="selected_schema" argument="--retrieve-bigsdb-schemas" label="Retrieve schemas for" type="integer" min="0"/>
</repeat>
</when>
<when value="databases">
<!-- No need to do anything -->
@ -50,7 +52,9 @@
</conditional>
</inputs>
<outputs>
<data name="mlst_profiles_output" label="${tool.name} on ${on_string}" format="csv" />
<data name="mlst_profiles_output" label="${tool.name} on ${on_string}" format="csv">
<filter>mode == "st"</filter>
</data>
</outputs>
<tests>
<test>