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Added CSV output filtering

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Harrison Deng 2025-02-18 21:26:56 +00:00
parent 4da6fa6f15
commit fe43e93576
1 changed files with 7 additions and 3 deletions
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8
autobigs-cli.xml
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@ -1,7 +1,7 @@
<tool id="autobigs-cli" name="AutoBIGS.CLI" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05"> <tool id="autobigs-cli" name="AutoBIGS.CLI" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
<description>Automated MLST typing from PubMLST and InstitutPasteur.</description> <description>Automated MLST typing from PubMLST and InstitutPasteur.</description>
<macros> <macros>
<token name="@TOOL_VERSION@">0.4.2</token> <token name="@TOOL_VERSION@">0.4.3</token>
<token name="@VERSION_SUFFIX@">0</token> <token name="@VERSION_SUFFIX@">0</token>
<import>autobigs-cli_macros.xml</import> <import>autobigs-cli_macros.xml</import>
<expand macro="bio_tools"/> <expand macro="bio_tools"/>
@ -35,7 +35,9 @@
<option value="databases"/> <option value="databases"/>
</param> </param>
<when value="schema"> <when value="schema">
<repeat name="schemas" title="Schemas">
<param name="selected_schema" argument="--retrieve-bigsdb-schemas" label="Retrieve schemas for" type="integer" min="0"/> <param name="selected_schema" argument="--retrieve-bigsdb-schemas" label="Retrieve schemas for" type="integer" min="0"/>
</repeat>
</when> </when>
<when value="databases"> <when value="databases">
<!-- No need to do anything --> <!-- No need to do anything -->
@ -50,7 +52,9 @@
</conditional> </conditional>
</inputs> </inputs>
<outputs> <outputs>
<data name="mlst_profiles_output" label="${tool.name} on ${on_string}" format="csv" /> <data name="mlst_profiles_output" label="${tool.name} on ${on_string}" format="csv">
<filter>mode == "st"</filter>
</data>
</outputs> </outputs>
<tests> <tests>
<test> <test>