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	| Author | SHA1 | Date | |
|---|---|---|---|
| 29fcf8c176 | |||
| 8264242fa5 | 
| @@ -15,7 +15,7 @@ from autobigs.engine.reading import read_fasta | ||||
| from autobigs.engine.structures.alignment import PairwiseAlignment | ||||
| from autobigs.engine.structures.genomics import NamedString | ||||
| from autobigs.engine.structures.mlst import Allele, NamedMLSTProfile, AlignmentStats, MLSTProfile | ||||
| from autobigs.engine.exceptions.database import NoBIGSdbExactMatchesException, NoBIGSdbMatchesException, NoSuchBIGSdbDatabaseException | ||||
| from autobigs.engine.exceptions.database import BIGSdbResponseNotOkay, NoBIGSdbExactMatchesException, NoBIGSdbMatchesException, NoSuchBIGSdbDatabaseException | ||||
|  | ||||
| from Bio.Align import PairwiseAligner | ||||
|  | ||||
| @@ -99,7 +99,10 @@ class RemoteBIGSdbMLSTProfiler(BIGSdbMLSTProfiler): | ||||
|                                 ) | ||||
|                                 yield result_allele if isinstance(sequence_string, str) else (sequence_string.name, result_allele) | ||||
|                         else: | ||||
|                             if response.status == 200: | ||||
|                                 raise NoBIGSdbMatchesException(self._database_name, self._scheme_id, sequence_string.name if isinstance(sequence_string, NamedString) else None) | ||||
|                             else: | ||||
|                                 raise BIGSdbResponseNotOkay(sequence_response) | ||||
|                 except (ConnectionError, ServerDisconnectedError, ClientOSError) as e: # Errors we will retry | ||||
|                     last_error = e | ||||
|                     success = False | ||||
|   | ||||
| @@ -3,6 +3,8 @@ from typing import Union | ||||
| class BIGSDbDatabaseAPIException(Exception): | ||||
|     pass | ||||
|  | ||||
| class BIGSdbResponseNotOkay(BIGSDbDatabaseAPIException): | ||||
|     pass | ||||
|  | ||||
| class NoBIGSdbMatchesException(BIGSDbDatabaseAPIException): | ||||
|     def __init__(self, database_name: str, database_scheme_id: int, query_name: Union[None, str], *args): | ||||
|   | ||||
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