18 Commits

Author SHA1 Message Date
b89f24a3fa Fixed issue where multiple allele identifiers were not returned in output. 2025-01-17 17:04:22 +00:00
e7c8c5bcf9 Changed allele CSV output to non-lists 2025-01-17 16:56:52 +00:00
7ea7ead46a Moved ABIF code to separate project 2025-01-17 14:27:25 +00:00
a3c864b565 Refactored code layout 2025-01-16 21:54:52 +00:00
f20a656f45 Fixed multiple string typing failure handling 2025-01-10 16:00:27 +00:00
0c0a2c9d4c Finished adding partial allele matching 2025-01-10 15:25:31 +00:00
03fbbe542e allele profiling partial matching works 2025-01-09 21:44:28 +00:00
9589761ddd Now tracks failed profilings 2025-01-09 17:27:15 +00:00
2843d0d592 Added tests to test continuous MLST despite failure 2025-01-09 17:04:53 +00:00
d4f890a150 Added specific tests for BIGSdbIndex 2025-01-09 16:23:42 +00:00
2c412c5526 Renamed tests subdirectory to mirror source 2025-01-09 15:00:46 +00:00
42d0f56b18 Moved to a general BIGSdb implementation
Updated tests

Removed ABIF UI for the time being

Began updating CLI
2025-01-08 21:32:10 +00:00
645357ac58 Added unit tests for pubMLST MLST profiling 2025-01-08 17:34:30 +00:00
d580402523 began adding PubMLST support 2025-01-08 16:54:57 +00:00
ad28d9bf20 Added additional test for fully automatic typing based on sequence 2025-01-08 16:31:06 +00:00
c3a492fa8f restructured MLST profiling classes 2025-01-08 16:24:42 +00:00
e93296705d Removed corresponding test 2025-01-08 15:15:32 +00:00
02985d5e37 Copied over most code from another of my projects 2025-01-08 15:14:06 +00:00