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34bf02c75a
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Increased timeout to 5 minutes
autoBIGS.engine/pipeline/tag Something is wrong with the build of this commit
autoBIGS.engine/pipeline/head There was a failure building this commit
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2025-03-13 18:37:33 +00:00 |
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3cb10a4609
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Added client error as acceptable exception
autoBIGS.engine/pipeline/head This commit looks good
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2025-03-13 18:13:38 +00:00 |
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1776f5aa51
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Fixed exception syntax
autoBIGS.engine/pipeline/head This commit looks good
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2025-03-13 16:51:15 +00:00 |
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96d715fdcb
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Added a server disconnect error catch
autoBIGS.engine/pipeline/head This commit looks good
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2025-03-13 16:27:59 +00:00 |
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e088d1080b
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Added functionality to retry determining ST
autoBIGS.engine/pipeline/head Something is wrong with the build of this commit
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2025-03-13 16:13:14 +00:00 |
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8ffc7c7fb5
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Added retry functionality for allele variant determination
autoBIGS.engine/pipeline/head This commit looks good
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2025-03-13 15:54:35 +00:00 |
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62fdada9c1
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Added original filename to csv output
autoBIGS.engine/pipeline/head Something is wrong with the build of this commit
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2025-03-13 14:17:08 +00:00 |
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17932ecd71
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Alleles IDs obtained from one sequence is named the ID of that sequence
autoBIGS.engine/pipeline/head There was a failure building this commit
Instead of generating a tuple comprised of the one sequence ID repeated
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2025-02-26 06:15:56 +00:00 |
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4b34036d17
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Fixed concurrent profile_multiple_strings implementation
autoBIGS.engine/pipeline/head This commit looks good
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2025-02-26 05:16:24 +00:00 |
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27ae89fde7
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Replaced schema with scheme
autoBIGS.engine/pipeline/head This commit looks good
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2025-02-26 04:50:54 +00:00 |
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b8cebb8ba4
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Infrastructure for concurrent processing implemented
autoBIGS.engine/pipeline/head This commit looks good
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2025-02-19 15:49:46 +00:00 |
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7384895578
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Writing now uses named MLST profile
automlst.engine/pipeline/head This commit looks good
automlst.engine/pipeline/tag This commit looks good
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2025-02-18 16:03:17 +00:00 |
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5a03c7e8d8
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Multiple string profiling now respects grouped queries (for non-WGS)
automlst.engine/pipeline/head This commit looks good
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2025-02-18 15:34:18 +00:00 |
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d0318536b2
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Changed FASTA reading to group based on file for merging partial targets
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2025-02-14 14:35:53 +00:00 |
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73aade2bde
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Merge branch 'features/improved-oop-architecture' into features/non-exact-notation
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2025-02-12 17:07:51 +00:00 |
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af8590baa7
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Removed import of deleted feature
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2025-02-12 17:07:10 +00:00 |
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36bca1b70d
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Merge branch 'features/improved-oop-architecture' into features/non-exact-notation
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2025-02-12 17:02:22 +00:00 |
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09a693b696
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Removed features being worked on in separate branch
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2025-02-12 17:02:00 +00:00 |
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ba606c35a9
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conversion of collection of alleles to map now produces results with tuples instead of lists
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2025-02-12 16:36:31 +00:00 |
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4183840ba0
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Added notation to indicate inexact matching in CSV
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2025-02-12 15:59:19 +00:00 |
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175a51f968
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Replaced local profiler with a not implemented exception
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2025-02-12 15:52:48 +00:00 |
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e568e9fb2c
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Adapted latest merged reading codebase to current codebase
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2025-02-11 19:13:29 +00:00 |
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4b9eb8674d
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Merge branch 'develop' into features/local-typing
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2025-02-11 17:55:34 +00:00 |
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f75707e4fe
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CSV output column order is now predictable (sorted)
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2025-02-11 17:54:48 +00:00 |
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b4845fab34
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Added automatic handling of strings instead of arrays of sequences to typing
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2025-02-06 21:15:50 +00:00 |
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fe999f1cab
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Added a unit test for multithreaded alignments
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2025-02-06 18:01:50 +00:00 |
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85946eb110
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Fixed match metric difference between remote and local
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2025-02-06 17:12:31 +00:00 |
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a27e09da31
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Added code to retrieve sequences and annotations from NCBI GenBank
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2025-02-06 17:11:20 +00:00 |
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ba2b688e89
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Removed sorting as it seems unecessary
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2025-02-05 22:06:50 +00:00 |
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49f31b7943
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Async aligner work tracking issue fixed
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2025-02-05 21:47:51 +00:00 |
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1c6e1cfb35
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Fixed issue with hashing a ndarray by using tuple.
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2025-02-05 20:43:53 +00:00 |
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fb99526162
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Updated iteration on asynchronous aligner
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2025-02-05 17:17:37 +00:00 |
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ff8a1aff08
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Implemented annotated local typing method without testing
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2025-02-04 16:19:00 +00:00 |
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3e3898334f
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Began implementing LazyPersistentCachedBIGSdbMLSTProfiler
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2025-01-27 22:03:49 +00:00 |
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ba1f0aa318
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Fixed potential memory leak
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2025-01-27 22:02:52 +00:00 |
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1773bb9dcb
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Updated naming (again).
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2025-01-22 21:05:19 +00:00 |
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