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CSV output column order is now predictable (sorted)

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Harrison Deng 2025-02-11 17:54:48 +00:00
parent 341ca933a3
commit f75707e4fe
1 changed files with 2 additions and 2 deletions
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4
src/autobigs/engine/data/local/csv.py
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@ -28,14 +28,14 @@ async def write_mlst_profiles_as_csv(mlst_profiles_iterable: AsyncIterable[tuple
failed.append(name)
continue
if writer is None:
header = ["id", "st", "clonal-complex", *mlst_profile.alleles.keys()]
header = ["id", "st", "clonal-complex", *sorted(mlst_profile.alleles.keys())]
writer = csv.DictWriter(filehandle, fieldnames=header)
writer.writeheader()
row_dictionary = {
"st": mlst_profile.sequence_type,
"clonal-complex": mlst_profile.clonal_complex,
"id": name,
**dict_loci_alleles_variants_from_loci(mlst_profile.alleles)
**mlst_profile.alleles
}
writer.writerow(rowdict=row_dictionary)
return failed