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b4845fab34
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Added automatic handling of strings instead of arrays of sequences to typing
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2025-02-06 21:15:50 +00:00 |
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fe999f1cab
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Added a unit test for multithreaded alignments
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2025-02-06 18:01:50 +00:00 |
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85946eb110
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Fixed match metric difference between remote and local
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2025-02-06 17:12:31 +00:00 |
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a27e09da31
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Added code to retrieve sequences and annotations from NCBI GenBank
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2025-02-06 17:11:20 +00:00 |
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ba2b688e89
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Removed sorting as it seems unecessary
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2025-02-05 22:06:50 +00:00 |
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49f31b7943
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Async aligner work tracking issue fixed
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2025-02-05 21:47:51 +00:00 |
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1c6e1cfb35
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Fixed issue with hashing a ndarray by using tuple.
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2025-02-05 20:43:53 +00:00 |
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fb99526162
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Updated iteration on asynchronous aligner
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2025-02-05 17:17:37 +00:00 |
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ff8a1aff08
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Implemented annotated local typing method without testing
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2025-02-04 16:19:00 +00:00 |
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341ca933a3
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Fixed typo in CI script
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2025-01-29 17:00:25 +00:00 |
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3e3898334f
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Began implementing LazyPersistentCachedBIGSdbMLSTProfiler
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2025-01-27 22:03:49 +00:00 |
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ba1f0aa318
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Fixed potential memory leak
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2025-01-27 22:02:52 +00:00 |
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6d0157581f
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Removed conda environment step for now
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2025-01-24 21:43:55 +00:00 |
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4bcbfa0c6a
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Began adding conda steps for automatic PRs to Bioconda
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2025-01-24 19:33:27 +00:00 |
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ca0f9673b0
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Upgraded Python version requirement due to use of f-strings
0.8.0
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2025-01-24 17:00:57 +00:00 |
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5048fa8057
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Deleted uneeded file
0.7.2
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2025-01-23 19:23:56 +00:00 |
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39125c848e
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Added a wildcard patch specifier for aiohttp
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2025-01-23 19:23:42 +00:00 |
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744a6c2009
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Pinned key dependency versions
0.7.1
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2025-01-23 17:57:07 +00:00 |
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1773bb9dcb
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Updated naming (again).
0.7.0
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2025-01-22 21:05:19 +00:00 |
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1372141b57
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Fixed typo in Jenkinsfile
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2025-01-22 20:30:55 +00:00 |
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677c5e1aa8
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Revert "Reapply "Began preparing for conda deployment""
This reverts commit ade2f3b84572b4356d404da2dbcd1d7266f10205.
0.6.0
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2025-01-22 18:29:37 +00:00 |
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53e74af20a
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Refactoring project name to autoBIGSst.engine
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2025-01-22 18:24:04 +00:00 |
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ade2f3b845
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Reapply "Began preparing for conda deployment"
This reverts commit 3bbef9ac3e0ca58f6f5f62a1e9bd1d8ae02fd75c.
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2025-01-20 19:56:51 +00:00 |
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c2c6d0b016
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Changed package publishing on git.reslate.systems back to username and password authentication
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2025-01-20 19:04:44 +00:00 |
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fc8eede420
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(Re-)added license file
0.5.2
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2025-01-20 18:14:46 +00:00 |
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3bbef9ac3e
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Revert "Began preparing for conda deployment"
This reverts commit fe797be34f5c2e77cdde00acfd32eeaaab259f2b.
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2025-01-20 17:52:29 +00:00 |
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660d803c9e
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Updated to not regenerate build recipe each time during CI
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2025-01-20 17:28:42 +00:00 |
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cb3aec554e
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Added git author information as environment variables
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2025-01-20 17:04:45 +00:00 |
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05e132c066
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Updated pipeline to refer to python module correctly
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2025-01-20 16:54:00 +00:00 |
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de36956cc0
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Updating kubernetes definitions to match CI server
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2025-01-20 16:26:11 +00:00 |
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fe797be34f
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Began preparing for conda deployment
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2025-01-17 21:31:38 +00:00 |
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b89f24a3fa
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Fixed issue where multiple allele identifiers were not returned in output.
0.5.1
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2025-01-17 17:04:22 +00:00 |
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e7c8c5bcf9
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Changed allele CSV output to non-lists
0.5
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2025-01-17 16:56:52 +00:00 |
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ab44dfaa48
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Publish to pypi if it has a release tag
0.4
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2025-01-17 15:13:47 +00:00 |
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611b956d88
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Elaborated on the README.md and added references to it in pyproject.toml
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2025-01-17 15:08:47 +00:00 |
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cb22dfac9b
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Merge branch 'develop'
0.3
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2025-01-17 14:34:16 +00:00 |
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7ea7ead46a
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Moved ABIF code to separate project
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2025-01-17 14:27:25 +00:00 |
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a3c864b565
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Refactored code layout
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2025-01-16 21:54:52 +00:00 |
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bad7dfc3a8
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Changing all publishing steps to use API keys
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2025-01-16 21:29:20 +00:00 |
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4fe0f0f287
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Added stage for publishing to test.pypi.org when the tag a version number.
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2025-01-16 21:22:49 +00:00 |
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3fd3ef9f20
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Updated package description
0.2.0
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2025-01-10 21:13:26 +00:00 |
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206a105bf9
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Rermoved publishing branch and tag conditions, publish errors are no longer considered failures
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2025-01-10 17:59:04 +00:00 |
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ad082b8af6
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Revert "Always publish on build success"
This reverts commit cc6a7563cafc15686e61810da6c412f27c82c1c8.
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2025-01-10 17:43:14 +00:00 |
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5118a25b6a
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publish step will now fail if twine upload fails
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2025-01-10 17:41:42 +00:00 |
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cc6a7563ca
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Always publish on build success
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2025-01-10 17:35:58 +00:00 |
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484e31879e
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Removed test installation step from CI
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2025-01-10 17:28:25 +00:00 |
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5449ae0c68
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Moved CLI to automlst.cli repo
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2025-01-10 17:22:12 +00:00 |
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e634647774
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Added untested partial matching
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2025-01-10 16:12:56 +00:00 |
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f20a656f45
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Fixed multiple string typing failure handling
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2025-01-10 16:00:27 +00:00 |
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0c0a2c9d4c
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Finished adding partial allele matching
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2025-01-10 15:25:31 +00:00 |
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