16 Commits

Author SHA1 Message Date
175a51f968 Replaced local profiler with a not implemented exception 2025-02-12 15:52:48 +00:00
e568e9fb2c Adapted latest merged reading codebase to current codebase 2025-02-11 19:13:29 +00:00
4b9eb8674d Merge branch 'develop' into features/local-typing 2025-02-11 17:55:34 +00:00
f75707e4fe CSV output column order is now predictable (sorted) 2025-02-11 17:54:48 +00:00
b4845fab34 Added automatic handling of strings instead of arrays of sequences to typing 2025-02-06 21:15:50 +00:00
fe999f1cab Added a unit test for multithreaded alignments 2025-02-06 18:01:50 +00:00
85946eb110 Fixed match metric difference between remote and local 2025-02-06 17:12:31 +00:00
a27e09da31 Added code to retrieve sequences and annotations from NCBI GenBank 2025-02-06 17:11:20 +00:00
ba2b688e89 Removed sorting as it seems unecessary 2025-02-05 22:06:50 +00:00
49f31b7943 Async aligner work tracking issue fixed 2025-02-05 21:47:51 +00:00
1c6e1cfb35 Fixed issue with hashing a ndarray by using tuple. 2025-02-05 20:43:53 +00:00
fb99526162 Updated iteration on asynchronous aligner 2025-02-05 17:17:37 +00:00
ff8a1aff08 Implemented annotated local typing method without testing 2025-02-04 16:19:00 +00:00
3e3898334f Began implementing LazyPersistentCachedBIGSdbMLSTProfiler 2025-01-27 22:03:49 +00:00
ba1f0aa318 Fixed potential memory leak 2025-01-27 22:02:52 +00:00
1773bb9dcb Updated naming (again). 2025-01-22 21:05:19 +00:00