|
|
53e74af20a
|
Refactoring project name to autoBIGSst.engine
|
2025-01-22 18:24:04 +00:00 |
|
|
|
ade2f3b845
|
Reapply "Began preparing for conda deployment"
This reverts commit 3bbef9ac3e0ca58f6f5f62a1e9bd1d8ae02fd75c.
|
2025-01-20 19:56:51 +00:00 |
|
|
|
c2c6d0b016
|
Changed package publishing on git.reslate.systems back to username and password authentication
|
2025-01-20 19:04:44 +00:00 |
|
|
|
fc8eede420
|
(Re-)added license file
0.5.2
|
2025-01-20 18:14:46 +00:00 |
|
|
|
3bbef9ac3e
|
Revert "Began preparing for conda deployment"
This reverts commit fe797be34f5c2e77cdde00acfd32eeaaab259f2b.
|
2025-01-20 17:52:29 +00:00 |
|
|
|
660d803c9e
|
Updated to not regenerate build recipe each time during CI
|
2025-01-20 17:28:42 +00:00 |
|
|
|
cb3aec554e
|
Added git author information as environment variables
|
2025-01-20 17:04:45 +00:00 |
|
|
|
05e132c066
|
Updated pipeline to refer to python module correctly
|
2025-01-20 16:54:00 +00:00 |
|
|
|
de36956cc0
|
Updating kubernetes definitions to match CI server
|
2025-01-20 16:26:11 +00:00 |
|
|
|
fe797be34f
|
Began preparing for conda deployment
|
2025-01-17 21:31:38 +00:00 |
|
|
|
b89f24a3fa
|
Fixed issue where multiple allele identifiers were not returned in output.
0.5.1
|
2025-01-17 17:04:22 +00:00 |
|
|
|
e7c8c5bcf9
|
Changed allele CSV output to non-lists
0.5
|
2025-01-17 16:56:52 +00:00 |
|
|
|
ab44dfaa48
|
Publish to pypi if it has a release tag
0.4
|
2025-01-17 15:13:47 +00:00 |
|
|
|
611b956d88
|
Elaborated on the README.md and added references to it in pyproject.toml
|
2025-01-17 15:08:47 +00:00 |
|
|
|
cb22dfac9b
|
Merge branch 'develop'
0.3
|
2025-01-17 14:34:16 +00:00 |
|
|
|
7ea7ead46a
|
Moved ABIF code to separate project
|
2025-01-17 14:27:25 +00:00 |
|
|
|
a3c864b565
|
Refactored code layout
|
2025-01-16 21:54:52 +00:00 |
|
|
|
bad7dfc3a8
|
Changing all publishing steps to use API keys
|
2025-01-16 21:29:20 +00:00 |
|
|
|
4fe0f0f287
|
Added stage for publishing to test.pypi.org when the tag a version number.
|
2025-01-16 21:22:49 +00:00 |
|
|
|
3fd3ef9f20
|
Updated package description
0.2.0
|
2025-01-10 21:13:26 +00:00 |
|
|
|
206a105bf9
|
Rermoved publishing branch and tag conditions, publish errors are no longer considered failures
|
2025-01-10 17:59:04 +00:00 |
|
|
|
ad082b8af6
|
Revert "Always publish on build success"
This reverts commit cc6a7563cafc15686e61810da6c412f27c82c1c8.
|
2025-01-10 17:43:14 +00:00 |
|
|
|
5118a25b6a
|
publish step will now fail if twine upload fails
|
2025-01-10 17:41:42 +00:00 |
|
|
|
cc6a7563ca
|
Always publish on build success
|
2025-01-10 17:35:58 +00:00 |
|
|
|
484e31879e
|
Removed test installation step from CI
|
2025-01-10 17:28:25 +00:00 |
|
|
|
5449ae0c68
|
Moved CLI to automlst.cli repo
|
2025-01-10 17:22:12 +00:00 |
|
|
|
e634647774
|
Added untested partial matching
|
2025-01-10 16:12:56 +00:00 |
|
|
|
f20a656f45
|
Fixed multiple string typing failure handling
|
2025-01-10 16:00:27 +00:00 |
|
|
|
0c0a2c9d4c
|
Finished adding partial allele matching
|
2025-01-10 15:25:31 +00:00 |
|
|
|
03fbbe542e
|
allele profiling partial matching works
|
2025-01-09 21:44:28 +00:00 |
|
|
|
e60dba936c
|
Added a tag name check for publishing
|
2025-01-09 18:32:51 +00:00 |
|
|
|
9589761ddd
|
Now tracks failed profilings
|
2025-01-09 17:27:15 +00:00 |
|
|
|
2843d0d592
|
Added tests to test continuous MLST despite failure
|
2025-01-09 17:04:53 +00:00 |
|
|
|
7bd28db6d4
|
Updated code coverage to only report on source code
|
2025-01-09 16:51:08 +00:00 |
|
|
|
463e320386
|
Updated BIGSdb API to be more tolerant towards failures
|
2025-01-09 16:49:12 +00:00 |
|
|
|
d4f890a150
|
Added specific tests for BIGSdbIndex
|
2025-01-09 16:23:42 +00:00 |
|
|
|
022200f197
|
Refactored class name
|
2025-01-09 16:22:50 +00:00 |
|
|
|
e66525d341
|
Updated README.md
|
2025-01-09 16:08:44 +00:00 |
|
|
|
1d531aff42
|
Updated CI to only report on automlst and fixed report publishing
|
2025-01-09 16:08:30 +00:00 |
|
|
|
8febfad282
|
Added publishing of coverage results
|
2025-01-09 15:55:39 +00:00 |
|
|
|
42bcfcf61d
|
Added coverage tracking
|
2025-01-09 15:54:22 +00:00 |
|
|
|
2c412c5526
|
Renamed tests subdirectory to mirror source
0.1.0
|
2025-01-09 15:00:46 +00:00 |
|
|
|
59cb5230e8
|
Enabling setuptools_scm
|
2025-01-09 07:54:13 +00:00 |
|
|
|
b32a522e39
|
Removed python version selector in CI for test step
|
2025-01-09 07:52:31 +00:00 |
|
|
|
e3047d60d7
|
Removed version selector for python
|
2025-01-09 07:45:19 +00:00 |
|
|
|
b893d853a7
|
Changing pipeline to use pip container instead of homebrew
|
2025-01-09 07:43:20 +00:00 |
|
|
|
9b8e448512
|
Completed updating CLI to be more organized with bettert error messages
|
2025-01-09 07:39:18 +00:00 |
|
|
|
42d0f56b18
|
Moved to a general BIGSdb implementation
Updated tests
Removed ABIF UI for the time being
Began updating CLI
|
2025-01-08 21:32:10 +00:00 |
|
|
|
645357ac58
|
Added unit tests for pubMLST MLST profiling
|
2025-01-08 17:34:30 +00:00 |
|
|
|
424beeb559
|
Refactored CLI naming
|
2025-01-08 16:55:55 +00:00 |
|
