2025-01-09 16:08:44 +00:00
|
|
|
# autoMLST
|
2025-01-08 15:14:06 +00:00
|
|
|
|
2025-01-09 16:08:44 +00:00
|
|
|
A CLI/library for rapidly performing MLST typing via accessing pubMLST and InstitutPasteur MSLT databases.
|
|
|
|
|
|
|
|
|
|
# Components
|
|
|
|
|
|
|
|
|
|
## automlst.cli
|
|
|
|
|
|
|
|
|
|
The command line interface, sets up very minimal and mostly makes calls to the library. Uses argparse and is split into two parts:
|
|
|
|
|
|
|
|
|
|
- `automlst info`: Provides user information on available databases to pull from, and the schemas available.
|
|
|
|
|
- `automlst exactmatch`: Provides users the ability to request exact match results from a given database and schema
|
