Re-organizing repositories by splitting this into two

2025-02-17 15:13:27 +00:00
parent eba984e43f
commit 9d117a37ea
8 changed files with 162 additions and 8 deletions
--- a/54
+++ b/54
@@ -0,0 +1,54 @@
+pipeline {
+    agent {
+        kubernetes {
+            cloud 'rsys-devel'
+            defaultContainer 'miniforge3'
+            inheritFrom 'miniforge'
+        }
+    }
+    stages {
+        stage("prepare") {
+            parallel {
+                stage("recipes repo") {
+                    steps {
+                        sh 'git clone https://github.com/RealYHD/bioconda-recipes.git'
+                        dir('bioconda-recipes') {
+                            sh 'git pull'
+                            sh 'git pull origin update-autobigs-engine'
+                            sh 'git pull origin update-autobigs-engine'
+                        }
+                    }
+                }
+                stage("conda") {
+                    steps {
+                        sh 'conda env update -n base --file environment.yml'
+                    }
+                }
+            }
+        }
+        stage("update recipes") {
+            parallel {
+                stage("autoBIGS.cli") {
+                    steps {
+                        sh 'grayskull pypi autobigs.cli --maintainers "Harrison Deng"'
+                        sh 'python scripts/adapt_names.py autobigs.cli'
+                    }
+                }
+                stage("autoBIGS.engine") {
+                    steps {
+                        sh 'grayskull pypi autobigs.cli --maintainers "Harrison Deng"'
+                        sh 'python scripts/adapt_names.py autobigs.engine'
+                    }
+                }
+            }
+            stage("overwrite") {
+                steps {
+                    dir('bioconda-recipes') {
+                        sh 'checkout '
+                        sh 'cp autobigs-engine/* '
+                    }
+                }
+            }
+        }
+    }
+}