54 lines
1.7 KiB
Groovy
54 lines
1.7 KiB
Groovy
pipeline {
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agent {
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kubernetes {
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cloud 'rsys-devel'
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defaultContainer 'miniforge3'
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inheritFrom 'miniforge'
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}
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}
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stages {
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stage("prepare") {
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parallel {
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stage("recipes repo") {
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steps {
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sh 'git clone https://github.com/RealYHD/bioconda-recipes.git'
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dir('bioconda-recipes') {
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sh 'git pull'
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sh 'git pull origin update-autobigs-engine'
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sh 'git pull origin update-autobigs-engine'
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}
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}
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}
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stage("conda") {
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steps {
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sh 'conda env update -n base --file environment.yml'
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}
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}
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}
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}
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stage("update recipes") {
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parallel {
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stage("autoBIGS.cli") {
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steps {
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sh 'grayskull pypi autobigs.cli --maintainers "Harrison Deng"'
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sh 'python scripts/adapt_names.py autobigs.cli'
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}
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}
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stage("autoBIGS.engine") {
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steps {
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sh 'grayskull pypi autobigs.cli --maintainers "Harrison Deng"'
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sh 'python scripts/adapt_names.py autobigs.engine'
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}
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}
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}
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stage("overwrite") {
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steps {
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dir('bioconda-recipes') {
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sh 'checkout '
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sh 'cp autobigs-engine/* '
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}
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}
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}
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}
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}
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} |