Harrison
419adcd098
Added failsafe for overlapping genes where length is not equal to a multiple of 3. Added codon ambiguity detection which translates to "X" in aa sequence.
25 lines
862 B
JSON
25 lines
862 B
JSON
{
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// Use IntelliSense to learn about possible attributes.
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// Hover to view descriptions of existing attributes.
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// For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
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"version": "0.2.0",
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"configurations": [
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{
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"name": "Splitter Single Gene with Translation",
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"type": "python",
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"request": "launch",
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"program": "${workspaceFolder}/msa_splitter.py",
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"args": [
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"${workspaceFolder}/tests/resources/test_msa-shortened.fa",
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"--gene-list", "${workspaceFolder}/tests/resources/gene_list.csv",
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"-C",
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"-E", "DEBUG",
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"--do-translate",
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"--gen-cut-stop-codon"
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],
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"console": "integratedTerminal",
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"justMyCode": true
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}
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]
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} |