Harrison
419adcd098
Added failsafe for overlapping genes where length is not equal to a multiple of 3. Added codon ambiguity detection which translates to "X" in aa sequence.
47 lines
1.4 KiB
YAML
47 lines
1.4 KiB
YAML
name: /home/ydeng/msa-splitter/envs
|
|
channels:
|
|
- conda-forge
|
|
dependencies:
|
|
- _libgcc_mutex=0.1=conda_forge
|
|
- _openmp_mutex=4.5=2_gnu
|
|
- biopython=1.81=py311h2582759_0
|
|
- black=23.3.0=py311h38be061_0
|
|
- bzip2=1.0.8=h7f98852_4
|
|
- ca-certificates=2022.12.7=ha878542_0
|
|
- click=8.1.3=unix_pyhd8ed1ab_2
|
|
- ld_impl_linux-64=2.40=h41732ed_0
|
|
- libblas=3.9.0=16_linux64_openblas
|
|
- libcblas=3.9.0=16_linux64_openblas
|
|
- libexpat=2.5.0=hcb278e6_1
|
|
- libffi=3.4.2=h7f98852_5
|
|
- libgcc-ng=12.2.0=h65d4601_19
|
|
- libgfortran-ng=12.2.0=h69a702a_19
|
|
- libgfortran5=12.2.0=h337968e_19
|
|
- libgomp=12.2.0=h65d4601_19
|
|
- liblapack=3.9.0=16_linux64_openblas
|
|
- libnsl=2.0.0=h7f98852_0
|
|
- libopenblas=0.3.21=pthreads_h78a6416_3
|
|
- libsqlite=3.40.0=h753d276_0
|
|
- libstdcxx-ng=12.2.0=h46fd767_19
|
|
- libuuid=2.38.1=h0b41bf4_0
|
|
- libzlib=1.2.13=h166bdaf_4
|
|
- mypy_extensions=1.0.0=pyha770c72_0
|
|
- ncurses=6.3=h27087fc_1
|
|
- numpy=1.24.2=py311h8e6699e_0
|
|
- openssl=3.1.0=h0b41bf4_0
|
|
- packaging=23.0=pyhd8ed1ab_0
|
|
- pathspec=0.11.1=pyhd8ed1ab_0
|
|
- pip=23.0.1=pyhd8ed1ab_0
|
|
- platformdirs=3.2.0=pyhd8ed1ab_0
|
|
- python=3.11.1=h2755cc3_0_cpython
|
|
- python_abi=3.11=3_cp311
|
|
- readline=8.2=h8228510_1
|
|
- setuptools=67.6.1=pyhd8ed1ab_0
|
|
- tk=8.6.12=h27826a3_0
|
|
- typing-extensions=4.5.0=hd8ed1ab_0
|
|
- typing_extensions=4.5.0=pyha770c72_0
|
|
- tzdata=2023c=h71feb2d_0
|
|
- wheel=0.40.0=pyhd8ed1ab_0
|
|
- xz=5.2.6=h166bdaf_0
|
|
prefix: /home/ydeng/msa-splitter/envs
|