Merge branch 'develop' of https://git.reslate.systems/ydeng/msa-splitter into develop

Jenkinsfile

@@ -10,6 +10,17 @@ pipeline {
         stage("build") {
             steps {
                 sh "python -m build"
+                sh "python -m pyinstaller ./splitmsa/"
+            }
+        }
+        stage("test") {
+            steps {
+                sh "pip install dist/*.whl"
+            }
+        }
+        stage("test") {
+            steps {
+                sh "pip install dist/*.whl"
             }
         }
         stage("publish") {

environment.yml

@@ -6,5 +6,4 @@ dependencies:
   - pytest=7.2.2
   - twine=4.0.2
   - biopython=1.81
-  - gooey=1.0.8.1
   - python=3.9

setup.cfg

@@ -5,8 +5,7 @@ version = 0.0.1
 [options]
 packages = splitmsa
 install_requires =
-    gooey
+    Bio ==1.81; python_version == "3.9"
-    Bio; python_version == "3.9"
 
 [options.entry_points]
 console_scripts =

splitmsa/splitmsa.py

@@ -14,7 +14,6 @@ import os
 from Bio import SeqIO, SeqRecord
 from Bio.Seq import Seq
 import csv
-from gooey import Gooey
 
 
 def read_genes_from_csv(batch_genes_csv_path: str):
@@ -309,7 +308,6 @@ def run(args):
         info(f"Completed gene {gene_name} ({start} - {end})")
 
 
-@Gooey
 def main():
     parser = argparse.ArgumentParser(
         prog="splitmsa",