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11
.devcontainer/Dockerfile
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11
.devcontainer/Dockerfile
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FROM mcr.microsoft.com/devcontainers/anaconda:1-3
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# Copy environment.yml (if found) to a temp location so we update the environment. Also
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# copy "noop.txt" so the COPY instruction does not fail if no environment.yml exists.
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COPY environment.yml* .devcontainer/noop.txt /tmp/conda-tmp/
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RUN if [ -f "/tmp/conda-tmp/environment.yml" ]; then umask 0002 && /opt/conda/bin/conda env update -n base -f /tmp/conda-tmp/environment.yml; fi \
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&& rm -rf /tmp/conda-tmp
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# [Optional] Uncomment this section to install additional OS packages.
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# RUN apt-get update && export DEBIAN_FRONTEND=noninteractive \
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# && apt-get -y install --no-install-recommends <your-package-list-here>
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35
.devcontainer/devcontainer.json
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35
.devcontainer/devcontainer.json
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// For format details, see https://aka.ms/devcontainer.json. For config options, see the
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// README at: https://github.com/devcontainers/templates/tree/main/src/anaconda
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{
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"name": "Anaconda (Python 3)",
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"build": {
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"context": "..",
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"dockerfile": "Dockerfile"
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},
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"customizations": {
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"vscode": {
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"extensions": [
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"ms-python.debugpy",
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"ms-python.python",
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"ms-python.vscode-pylance",
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"ms-python.black-formatter",
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"ms-python.flake8"
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]
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}
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}
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// Features to add to the dev container. More info: https://containers.dev/features.
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// "features": {},
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// Use 'forwardPorts' to make a list of ports inside the container available locally.
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// "forwardPorts": [],
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// Use 'postCreateCommand' to run commands after the container is created.
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// "postCreateCommand": "python --version",
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// Configure tool-specific properties.
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// "customizations": {},
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// Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root.
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// "remoteUser": "root"
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}
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3
.devcontainer/noop.txt
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3
.devcontainer/noop.txt
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This file copied into the container along with environment.yml* from the parent
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folder. This file is included to prevents the Dockerfile COPY instruction from
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failing if no environment.yml is found.
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24
Jenkinsfile
vendored
24
Jenkinsfile
vendored
@ -1,26 +1,26 @@
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pipeline {
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agent any
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agent {
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kubernetes {
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cloud 'Reslate Systems'
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defaultContainer 'conda'
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}
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}
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stages {
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stage("clean") {
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steps {
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sh 'rm -rf ./dist/*'
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}
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}
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stage("install") {
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steps {
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sh 'mamba env update --file environment.yml'
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sh 'echo "mamba activate splitmsa" >> ~/.bashrc'
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sh 'conda update conda -y -q'
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sh 'conda env update -n base --file environment.yml'
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}
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}
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stage("build") {
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steps {
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sh "python -m build"
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sh "conda run -n base python -m build"
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}
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}
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stage("test") {
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steps {
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sh "pip install dist/*.whl"
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sh "splitmsa -h"
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sh "conda run -n base pip install dist/*.whl"
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sh "conda run -n base splitmsa -h"
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}
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}
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stage("archive") {
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@ -34,7 +34,7 @@ pipeline {
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}
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steps {
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withCredentials([usernamePassword(credentialsId: 'rs-git-package-registry-ydeng', passwordVariable: 'PASS', usernameVariable: 'USER')]) {
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sh "python -m twine upload --repository-url https://git.reslate.systems/api/packages/${USER}/pypi -u ${USER} -p ${PASS} --non-interactive --disable-progress-bar --verbose dist/*"
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sh "conda run -n base python -m twine upload --repository-url https://git.reslate.systems/api/packages/${USER}/pypi -u ${USER} -p ${PASS} --non-interactive --disable-progress-bar --verbose dist/*"
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}
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}
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}
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