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Updated translation mechanism.

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Added failsafe for overlapping genes where length is not equal to a multiple of 3.

Added codon ambiguity detection which translates to "X" in aa sequence.
This commit is contained in:
Harrison Deng
2023-03-30 16:16:00 -05:00
parent 016152970c
commit 419adcd098
7 changed files with 853 additions and 34641 deletions
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7
tests/resources/gene_list.csv Normal file
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Gene,Start,End
ORF1ab,266,21555
ORF1a,266,21555
S,21563,25384
ORF3a,25393,26220
M,26523,27191
E,26245,26472
1 Gene Start End
2 ORF1ab 266 21555
3 ORF1a 266 21555
4 S 21563 25384
5 ORF3a 25393 26220
6 M 26523 27191
7 E 26245 26472