Removed "Gooey" as dependency and fixed "setup.cfg"
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Jenkinsfile
vendored
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Jenkinsfile
vendored
@ -12,6 +12,11 @@ pipeline {
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sh "python -m build"
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sh "python -m build"
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}
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}
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}
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}
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stage("test") {
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steps {
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sh "pip install dist/*.whl"
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}
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}
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stage("publish") {
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stage("publish") {
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when {
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when {
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branch '**/master'
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branch '**/master'
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@ -6,5 +6,4 @@ dependencies:
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- pytest=7.2.2
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- pytest=7.2.2
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- twine=4.0.2
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- twine=4.0.2
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- biopython=1.81
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- biopython=1.81
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- gooey=1.0.8.1
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- python=3.9
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- python=3.9
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@ -5,8 +5,7 @@ version = 0.0.1
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[options]
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[options]
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packages = splitmsa
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packages = splitmsa
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install_requires =
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install_requires =
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gooey
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Bio ==1.81; python_version == "3.9"
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Bio; python_version == "3.9"
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[options.entry_points]
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[options.entry_points]
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console_scripts =
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console_scripts =
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@ -14,7 +14,6 @@ import os
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from Bio import SeqIO, SeqRecord
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from Bio import SeqIO, SeqRecord
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from Bio.Seq import Seq
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from Bio.Seq import Seq
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import csv
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import csv
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from gooey import Gooey
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def read_genes_from_csv(batch_genes_csv_path: str):
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def read_genes_from_csv(batch_genes_csv_path: str):
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@ -309,7 +308,6 @@ def run(args):
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info(f"Completed gene {gene_name} ({start} - {end})")
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info(f"Completed gene {gene_name} ({start} - {end})")
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@Gooey
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def main():
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def main():
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parser = argparse.ArgumentParser(
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parser = argparse.ArgumentParser(
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prog="splitmsa",
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prog="splitmsa",
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