Regenerated .gitignore.

.gitignore

@@ -1,5 +1,21 @@
-# Created by https://www.toptal.com/developers/gitignore/api/python,visualstudiocode
+# File created using '.gitignore Generator' for Visual Studio Code: https://bit.ly/vscode-gig
-# Edit at https://www.toptal.com/developers/gitignore?templates=python,visualstudiocode
+# Created by https://www.toptal.com/developers/gitignore/api/visualstudiocode,linux,python,venv,virtualenv
+# Edit at https://www.toptal.com/developers/gitignore?templates=visualstudiocode,linux,python,venv,virtualenv
+
+### Linux ###
+*~
+
+# temporary files which can be created if a process still has a handle open of a deleted file
+.fuse_hidden*
+
+# KDE directory preferences
+.directory
+
+# Linux trash folder which might appear on any partition or disk
+.Trash-*
+
+# .nfs files are created when an open file is removed but is still being accessed
+.nfs*
 
 ### Python ###
 # Byte-compiled / optimized / DLL files
@@ -173,6 +189,22 @@ poetry.toml
 # LSP config files
 pyrightconfig.json
 
+### venv ###
+# Virtualenv
+# http://iamzed.com/2009/05/07/a-primer-on-virtualenv/
+[Bb]in
+[Ii]nclude
+[Ll]ib
+[Ll]ib64
+[Ll]ocal
+[Ss]cripts
+pyvenv.cfg
+pip-selfcheck.json
+
+### VirtualEnv ###
+# Virtualenv
+# http://iamzed.com/2009/05/07/a-primer-on-virtualenv/
+
 ### VisualStudioCode ###
 .vscode/*
 !.vscode/settings.json
@@ -192,9 +224,9 @@ pyrightconfig.json
 .history
 .ionide
 
-# End of https://www.toptal.com/developers/gitignore/api/python,visualstudiocode
+# End of https://www.toptal.com/developers/gitignore/api/visualstudiocode,linux,python,venv,virtualenv
+
+# Custom rules (everything added below won't be overriden by 'Generate .gitignore File' if you use 'Update' option)
 
 output
-.vscode
+envs
-input_fasta.fasta
-gene_list.csv