splitmsa/.vscode/launch.json

{
    // Use IntelliSense to learn about possible attributes.
    // Hover to view descriptions of existing attributes.
    // For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
    "version": "0.2.0",
    "configurations": [
        {
            "name": "Splitter Single Gene with Translation",
            "type": "python",
            "request": "launch",
            "program": "${workspaceFolder}/splitmsa/splitmsa.py",
            "args": [
                "${workspaceFolder}/tests/resources/test_msa-shortened.fa",
                "--gene-list",
                "${workspaceFolder}/tests/resources/gene_list.csv",
                "-C",
                "-E",
                "DEBUG",
                "--do-translate",
                "--gen-cut-stop-codon"
            ],
            "console": "integratedTerminal",
            "justMyCode": true
        }
    ]
}