From fe1112ed91efe3f94979756d3c819a4c8eb041b5 Mon Sep 17 00:00:00 2001 From: Harrison Deng Date: Fri, 3 Jan 2025 20:52:57 +0000 Subject: [PATCH] Added a README.md --- README.md | 12 ++++++++++++ 1 file changed, 12 insertions(+) create mode 100644 README.md diff --git a/README.md b/README.md new file mode 100644 index 0000000..362c819 --- /dev/null +++ b/README.md @@ -0,0 +1,12 @@ +# NSBDiagnosis Toolkit + +A software suite automating the diagnostic steps from Sanger Trace Files (ABIFs) and FASTAs. Namely, this tool is (or will be) capable of: + +- [ ] Improved consensus conflict resolution via a peak strength metric +- [ ] Automatic reporting on variations from a reference file +- [x] Automatic annotating based off pre-existing GenBank data from NCBI +- [x] Automatic pulling GenBank Data +- [x] Automatic querying of Institut Pasteur's MLST databases +- [x] Automatic export of spreadsheet file in the form of a CSV +- [x] User friendly, and automatable (Galaxy compatible) command-line interface +- [ ] Interactive Web UI \ No newline at end of file