Completed CLI for B. pertussis MLST typing from fasta files

2025-01-03 19:20:19 +00:00
parent 362e0867e5
commit e9977d2da7
17 changed files with 230 additions and 51 deletions
--- a/tests/mlstmyfasta/engine/local/test_abif.py
+++ b/tests/mlstmyfasta/engine/local/test_abif.py
@@ -1,8 +1,8 @@
 import os

-from mlstmyfasta.engine.local.abif import load_sanger_sequence
+from mlstmyfasta.engine.local.abif import read_abif

 async def test_load_sanger_sequence_has_data():
    assert os.path.exists("tests/resources/1I1_F_P1815443_047.ab1")
-    result_data = await load_sanger_sequence("tests/resources/1I1_F_P1815443_047.ab1")
+    result_data = await read_abif("tests/resources/1I1_F_P1815443_047.ab1")
    assert result_data is not None