Completed NCBI lookup, FASTA reading, ABIF reading, and Institut Pasteur querying

tests/mlstmyfasta/engine/local/test_abif.py

@@ -0,0 +1,8 @@
+import os
+
+from mlstmyfasta.engine.local.abif import load_sanger_sequence
+
+async def test_load_sanger_sequence_has_data():
+    assert os.path.exists("tests/resources/1I1_F_P1815443_047.ab1")
+    result_data = await load_sanger_sequence("tests/resources/1I1_F_P1815443_047.ab1")
+    assert result_data is not None

tests/mlstmyfasta/engine/local/test_fasta.py

@@ -0,0 +1,7 @@
+from mlstmyfasta.engine.local.fasta import read_fasta
+
+
+async def test_fasta_reader_not_none():
+    named_strings = read_fasta("tests/resources/tohama_I_bpertussis.fasta")
+    async for named_string in named_strings:
+        assert named_string.name == "BX470248.1"