Renaming project to NSBDiagnosisToolkit

tests/nsbdiagnosistoolkit/engine/local/test_abif.py

@@ -1,6 +1,6 @@
 import os
 
-from mlstmyfasta.engine.local.abif import read_abif
+from nsbdiagnosistoolkit.engine.local.abif import read_abif
 
 async def test_load_sanger_sequence_has_data():
     assert os.path.exists("tests/resources/1I1_F_P1815443_047.ab1")

tests/nsbdiagnosistoolkit/engine/local/test_fasta.py

@@ -1,4 +1,4 @@
-from mlstmyfasta.engine.local.fasta import read_fasta
+from nsbdiagnosistoolkit.engine.local.fasta import read_fasta
 
 
 async def test_fasta_reader_not_none():

tests/nsbdiagnosistoolkit/engine/remote/databases/institutpasteur/test_profiling.py

@@ -1,6 +1,6 @@
 from Bio import SeqIO
-from mlstmyfasta.engine.data.MLST import Allele, MLSTProfile
-from mlstmyfasta.engine.remote.databases.institutpasteur.profiling import InstitutPasteurProfiler
+from nsbdiagnosistoolkit.engine.data.MLST import Allele, MLSTProfile
+from nsbdiagnosistoolkit.engine.remote.databases.institutpasteur.profiling import InstitutPasteurProfiler
 
 
 async def test_profiling_results_in_exact_matches_when_exact():

tests/nsbdiagnosistoolkit/engine/remote/databases/ncbi/test_genbank.py

@@ -1,4 +1,4 @@
-from mlstmyfasta.engine.remote.databases.ncbi.genbank import fetch_ncbi_genbank
+from nsbdiagnosistoolkit.engine.remote.databases.ncbi.genbank import fetch_ncbi_genbank
 
 
 async def test_fetch_ncbi_genbank_with_id_works():

tests/nsbdiagnosistoolkit/engine/test_annotate.py

@@ -1,7 +1,7 @@
-from mlstmyfasta.engine.annotate import annotate_from_genbank, fetch_ncbi_genbank
+from nsbdiagnosistoolkit.engine.annotate import annotate_from_genbank, fetch_ncbi_genbank
 from Bio import SeqIO
 
-from mlstmyfasta.engine.data.genomics import AnnotatedString
+from nsbdiagnosistoolkit.engine.data.genomics import AnnotatedString
 
 async def test_annotate_from_genbank_for_adk_annotation():
     sequence = str(SeqIO.read("tests/resources/tohama_I_bpertussis.fasta", "fasta").seq)