No more error when output folder already exists

2025-01-03 22:49:00 +00:00
parent afbd883e3e
commit 18b003e0e2
3 changed files with 3 additions and 3 deletions
--- a/src/nsbdiagnosistoolkit/cli/root.py
+++ b/src/nsbdiagnosistoolkit/cli/root.py
@@ -58,7 +58,7 @@ parser.add_argument(
 def cli():
    args = parser.parse_args()
    gen_strings = aggregator.aggregate_sequences(args.fastas, args.abifs)
-    os.makedirs(args.out)
+    os.makedirs(args.out, exist_ok=True)
    if args.institut_pasteur_db is not None:
        mlst_profiles = aggregator.profile_all_genetic_strings(
            gen_strings, args.institut_pasteur_db)