sangeranalysis.engine/Jenkinsfile

45 lines
1.5 KiB
Plaintext
Raw Normal View History

2025-01-03 19:26:21 +00:00
pipeline {
agent {
kubernetes {
cloud 'rsys-devel'
defaultContainer 'homebrew'
inheritFrom 'homebrew'
}
}
stages {
stage("install") {
steps {
sh 'brew install python@3.11 sphinx-doc'
sh 'python3.11 -m pip install -r requirements.txt'
}
}
stage("unit tests") {
steps {
sh returnStatus: true, script: "python3.11 -m pytest --junitxml=test_results.xml"
xunit checksName: '', tools: [JUnit(excludesPattern: '', pattern: 'test_results.xml', stopProcessingIfError: true)]
}
}
stage("test installation") {
steps {
sh "python3.11 -m pip install dist/*.whl --force-reinstall"
sh "mlstmyfasta -h"
}
}
stage("archive") {
steps {
archiveArtifacts artifacts: 'dist/*.tar.gz, dist/*.whl', fingerprint: true, followSymlinks: false, onlyIfSuccessful: true
}
}
stage("publish") {
environment {
CREDS = credentials('git.reslate.systems/ydeng')
}
when {
branch '**/main'
}
steps {
sh returnStatus: true, script: 'python3.11 -m twine upload --repository-url https://git.reslate.systems/api/packages/${CREDS_USR}/pypi -u ${CREDS_USR} -p ${CREDS_PSW} --non-interactive --disable-progress-bar --verbose dist/*'
}
}
}
}