sangeranalysis.engine/tests/nsbdiagnosistoolkit/engine/local/test_abif.py

import os

from nsbdiagnosistoolkit.engine.local.abif import read_abif

async def test_load_sanger_sequence_has_data():
    assert os.path.exists("tests/resources/1I1_F_P1815443_047.ab1")
    result_data = await read_abif("tests/resources/1I1_F_P1815443_047.ab1")
    assert result_data is not None
Completed NCBI lookup, FASTA reading, ABIF reading, and Institut Pasteur querying 2025-01-03 16:41:51 +00:00			`import os`

Renaming project to NSBDiagnosisToolkit 2025-01-03 19:56:55 +00:00			`from nsbdiagnosistoolkit.engine.local.abif import read_abif`
Completed NCBI lookup, FASTA reading, ABIF reading, and Institut Pasteur querying 2025-01-03 16:41:51 +00:00
			`async def test_load_sanger_sequence_has_data():`
			`assert os.path.exists("tests/resources/1I1_F_P1815443_047.ab1")`
Completed CLI for B. pertussis MLST typing from fasta files 2025-01-03 19:20:19 +00:00			`result_data = await read_abif("tests/resources/1I1_F_P1815443_047.ab1")`
Completed NCBI lookup, FASTA reading, ABIF reading, and Institut Pasteur querying 2025-01-03 16:41:51 +00:00			`assert result_data is not None`