generated from ydeng/python-program
Harrison Deng
58adf3efe8
Some checks failed
ydeng/modvcfsamples/pipeline/head There was a failure building this commit
18 lines
1.9 KiB
Plaintext
18 lines
1.9 KiB
Plaintext
##fileformat=VCFv4.1
|
|
##fileDate=10122015_22h01m13s
|
|
##source=SHAPEIT2.v837
|
|
##log_file=shapeit_10122015_22h01m13s_3f764d75-2fbb-42df-ab75-8c2dfd5731ce.log
|
|
##FORMAT=<ID=GT,Number=1,Type=String,Description="Phased Genotype">
|
|
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT Gambian Chinese French Brazilian Nigerian Pakistani English Colombian Indian Japanese
|
|
1 846808 rs4475691 C T 100 . AC=1276;AN=5008;DP=20368 GT:GQ:DP 1:70:60 0:30:10 0:20:40 ./.:0:0 0:70:60 0:90:30 0:80:70 0:50:80 ./.:0:0 0:100:80
|
|
1 846854 rs111957712 G A 100 . AC=114;AN=5008;DP=20538 GT:GQ:DP ./.:0:0 0:40:30 0:80:30 0:0:20 0:40:80 0:10:30 ./.:0:0 ./.:0:0 0:70:0 0:90:30
|
|
1 846864 rs950122 G C 100 . AC=1116;AN=5008;DP=20582 GT:GQ:DP 1:60:0 0:20:0 0:90:70 0:80:50 0:80:30 0:10:80 0:100:20 0:30:40 ./.:0:0 0:30:90
|
|
1 847228 rs3905286 C T 100 . AC=1215;AN=5008;DP=20731 GT:GQ:DP 1:70:80 0:90:80 0:60:50 0:60:90 0:30:40 0:70:10 0:100:80 0:100:50 0:70:100 0:40:40
|
|
1 847297 rs11507768 G A 100 . AC=359;AN=5008;DP=20809 GT:GQ:DP 1:0:60 0:10:30 0:80:60 ./.:0:0 0:10:100 0:10:100 ./.:0:0 0:100:40 0:20:20 0:10:0
|
|
1 847491 rs28407778 G A 100 . AC=1262;AN=5008;DP=16939 GT:GQ:DP 1:0:100 0:70:40 0:0:60 0:90:90 0:90:90 ./.:0:0 0:70:60 0:70:0 0:90:100 0:60:60
|
|
1 848023 rs144407116 C A 100 . AC=52;AN=5008;DP=22562 GT:GQ:DP 0:10:60 0:20:80 0:20:50 0:20:90 0:90:10 0:70:60 0:40:30 0:60:0 0:40:40 0:10:10
|
|
1 848090 rs4246505 G A 100 . AC=857;AN=5008;DP=19301 GT:GQ:DP 0:70:70 0:90:30 0:40:10 0:80:20 0:50:50 0:10:30 ./.:0:0 0:20:60 ./.:0:0 0:90:0
|
|
1 848445 rs4626817 G A 100 . AC=1255;AN=5008;DP=18444 GT:GQ:DP 1:100:40 0:80:90 0:30:100 0:100:60 0:40:90 0:20:30 0:70:100 ./.:0:0 ./.:0:0 0:80:30
|
|
1 848456 rs11507767 A G 100 . AC=1266;AN=5008;DP=18137 GT:GQ:DP 1:40:30 ./.:0:0 0:60:90 0:60:40 0:100:80 0:50:50 0:0:10 0:60:0 0:100:100 ./.:0:0
|
|
1 848738 rs3829741 C T 100 . AC=855;AN=5008;DP=16663 GT:GQ:DP 0:50:90 0:50:50 0:50:30 0:60:60 0:80:40 0:50:80 0:0:80 0:0:30 0:10:0 0:70:30
|