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2 Commits
Author | SHA1 | Date | |
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1b08cee027 | |||
c9bc645cc3 |
2
.vscode/launch.json
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2
.vscode/launch.json
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@ -8,7 +8,7 @@
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"name": "Run Fasta Filter",
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"type": "python",
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"request": "launch",
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"module": "filterfasta.cli",
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"program": "${workspaceFolder}/filterfasta/filterfasta.py",
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"args": [
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"reference_standards.fas",
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"reference_standards_filtered.fas",
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5
Jenkinsfile
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5
Jenkinsfile
vendored
@ -8,8 +8,7 @@ pipeline {
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}
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stage("install") {
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steps {
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sh 'mamba env update --file environment.yml'
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sh 'echo "mamba activate filterfasta" >> ~/.bashrc'
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sh 'mamba env update --file environment.yml --prefix ./env || mamba env create --force --file environment.yml --prefix ./env'
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}
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}
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stage("build") {
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@ -25,7 +24,7 @@ pipeline {
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}
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stage("archive") {
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steps {
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archiveArtifacts artifacts: 'dist/*.tar.gz, dist/*.whl'
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archiveArtifacts artifacts: 'dist/*.tar.gz, dist/*.whl', fingerprint: true, followSymlinks: false, onlyIfSuccessful: true
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}
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}
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stage("publish") {
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@ -7,3 +7,4 @@ dependencies:
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- twine=4
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- biopython=1.81
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- python=3.11
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prefix: ./env
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