ydeng/filterfasta
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Fixed "all" property check.

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This commit is contained in:
Harrison Deng 2023-03-10 16:28:03 -06:00
parent 42d73270b3
commit 9c8dd08188
3 changed files with 4 additions and 3 deletions
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2
.vscode/launch.json vendored
View File

@ -11,7 +11,7 @@
"program": "fasta_filter.py", "program": "fasta_filter.py",
"args": [ "args": [
"reference_standards.fas", "reference_standards.fas",
"reference_stasndards_filtered.fas", "reference_standards_filtered.fas",
"-c", "rt" "-c", "rt"
], ],
"console": "integratedTerminal", "console": "integratedTerminal",

4
fasta_filter.py
View File

@ -14,8 +14,8 @@ def main(args):
kept_records.append(s_record) kept_records.append(s_record)
elif args.property == "all" and not ( elif args.property == "all" and not (
args.contains in s_record.id args.contains in s_record.id
and args.contains in s_record.name or args.contains in s_record.name
and args.contains in s_record.description): or args.contains in s_record.description):
kept_records.append(s_record) kept_records.append(s_record)
SeqIO.write( SeqIO.write(
kept_records, kept_records,

1
requirements.txt Normal file
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@ -0,0 +1 @@
Bio==1.5.6