ydeng/filterfasta
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Merge branch 'master' of https://git.reslate.systems/ydeng/fasta_filter

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Harrison Deng 2023-03-10 16:28:07 -06:00
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@ -14,5 +14,5 @@ A simple program to remove sequences in a fasta file containing specific strings
1. Pretend `input.fasta` exists in the same folder as `fasta_filter.py` (the program file). 1. Pretend `input.fasta` exists in the same folder as `fasta_filter.py` (the program file).
2. To remove all sequences in `input.fasta` that contain `rt` in the header and output to a new file called `input_filtered.fasta`, run: `python3 ./fasta_filter input.fasta input_filtered.fasta -c rt` 2. To remove all sequences in `input.fasta` that contain `rt` in the header and output to a new file called `input_filtered.fasta`, run: `python3 ./fasta_filter.py input.fasta input_filtered.fasta -c rt`