4383e36c1f 
					 
					
						
						
							
							Removed space in doc title  
						
						 
						
						
	
		
			
	 
		 
	
	
		
	
	
		
			
				
	 
				ydeng/bmlsa/pipeline/head This commit looks good 
				
			 
		
		
	 
 
	 
						
						
					 
					
						2023-04-28 14:01:10 -05:00  
					
					
						 
						
						
							
							
							 
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						cbf32d253b 
					 
					
						
						
							
							Added docs cleaning step to pipeline  
						
						 
						
						
	
		
			
	 
		 
	
	
		
	
	
		
			
				
	 
				ydeng/bmlsa/pipeline/head This commit looks good 
				
			 
		
		
	 
 
	 
						
						
					 
					
						2023-04-28 13:56:10 -05:00  
					
					
						 
						
						
							
							
							 
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						e942b65ebd 
					 
					
						
						
							
							Added '--force' to 'sphinx-apidoc' step  
						
						 
						
						
	
		
			
	 
		 
	
	
		
	
	
		
			
				
	 
				ydeng/bmlsa/pipeline/head This commit looks good 
				
			 
		
		
	 
 
	 
						
						
					 
					
						2023-04-28 13:42:38 -05:00  
					
					
						 
						
						
							
							
							 
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						47cdd8bc28 
					 
					
						
						
							
							Added basic automatic documentation generation  
						
						 
						
						
	
		
			
	 
		 
	
	
		
	
	
		
			
				
	 
				ydeng/bmlsa/pipeline/head Something is wrong with the build of this commit 
				
			 
		
		
	 
 
	 
						
						
					 
					
						2023-04-28 13:28:12 -05:00  
					
					
						 
						
						
							
							
							 
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						11d5590355 
					 
					
						
						
							
							Added another post-installation test step  
						
						 
						
						
						
						
					 
					
						2023-04-28 11:32:17 -05:00  
					
					
						 
						
						
							
							
							 
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						3c5e934c7c 
					 
					
						
						
							
							Updated 'Jenkinsfile' to fingerprint generated artifacts  
						
						 
						
						
	
		
			
	 
		 
	
	
		
	
	
		
			
				
	 
				ydeng/bmlsa/pipeline/head This commit looks good 
				
			 
		
		
	 
 
	 
						
						
					 
					
						2023-04-28 11:14:42 -05:00  
					
					
						 
						
						
							
							
							 
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						2f86ec050f 
					 
					
						
						
							
							Pipeline now updates environment if possible, otherwise, re-creates it  
						
						 
						
						
	
		
			
	 
		 
	
	
		
	
	
		
			
				
	 
				ydeng/bmlsa/pipeline/head There was a failure building this commit 
				
			 
		
		
	 
 
	 
						
						
					 
					
						2023-04-28 11:02:15 -05:00  
					
					
						 
						
						
							
							
							 
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						51c2bd1f7b 
					 
					
						
						
							
							Conda environment creation now has '--force' for pipeline  
						
						 
						
						
	
		
			
	 
		 
	
	
		
	
	
		
			
				
	 
				ydeng/bmlsa/pipeline/head There was a failure building this commit 
				
			 
		
		
	 
 
	 
						
						
					 
					
						2023-04-28 10:58:31 -05:00  
					
					
						 
						
						
							
							
							 
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						ae3732eba2 
					 
					
						
						
							
							Many changes, see details:  
						
						 
						
						... 
						
						
	
		
			
	 
		 
	
	
		
	
	
		
			
				
	 
				ydeng/bmlsa/pipeline/head There was a failure building this commit 
				
			 
		
		
	 
 
	 
						
						Now allow for changing whether alignment is local or global and various scoring parameters
Refactored directory structure
Removed redundant aligned dict pattern for simple iterable
Added unit tests 
						
						
					 
					
						2023-04-28 10:49:07 -05:00  
					
					
						 
						
						
							
							
							 
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						f1fe568818 
					 
					
						
						
							
							Added testing of pip installation and archiving  
						
						 
						
						
	
		
			
	 
		 
	
	
		
	
	
		
			
				
	 
				ydeng/bmlsa/pipeline/head This commit looks good 
				
			 
		
		
	 
 
	 
						
						
					 
					
						2023-04-24 09:40:29 -05:00  
					
					
						 
						
						
							
							
							 
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						1d0da9a675 
					 
					
						
						
							
							CI no longer fails on unsuccessful package upload  
						
						 
						
						
	
		
			
	 
		 
	
	
		
	
	
		
			
				
	 
				ydeng/bmlsa/pipeline/head This commit looks good 
				
			 
		
		
	 
 
	 
						
						
					 
					
						2023-04-21 14:33:26 -05:00  
					
					
						 
						
						
							
							
							 
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						6b3c9c312e 
					 
					
						
						
							
							Added 'Jenkinsfile' and 'environment.yml'  
						
						 
						
						
	
		
			
	 
		 
	
	
		
	
	
		
			
				
	 
				ydeng/bmlsa/pipeline/head There was a failure building this commit 
				
			 
		
		
	 
 
	 
						
						
					 
					
						2023-04-21 11:44:01 -05:00