Changing documentation generation structure

docs/source/bmlsa.rst

@@ -1,53 +0,0 @@
-bmlsa package
-=============
-
-Submodules
-----------
-
-bmlsa.aligner module
---------------------
-
-.. automodule:: bmlsa.aligner
-   :members:
-   :undoc-members:
-   :show-inheritance:
-
-bmlsa.cli module
-----------------
-
-.. automodule:: bmlsa.cli
-   :members:
-   :undoc-members:
-   :show-inheritance:
-
-bmlsa.datatypes module
-----------------------
-
-.. automodule:: bmlsa.datatypes
-   :members:
-   :undoc-members:
-   :show-inheritance:
-
-bmlsa.exceptions module
------------------------
-
-.. automodule:: bmlsa.exceptions
-   :members:
-   :undoc-members:
-   :show-inheritance:
-
-bmlsa.io module
----------------
-
-.. automodule:: bmlsa.io
-   :members:
-   :undoc-members:
-   :show-inheritance:
-
-Module contents
----------------
-
-.. automodule:: bmlsa
-   :members:
-   :undoc-members:
-   :show-inheritance:

docs/source/index.rst

@@ -7,10 +7,11 @@ Welcome to BMLSA's documentation!
 =================================
 
 .. toctree::
+   :glob:
    :maxdepth: 2
    :caption: Contents:
    
-   modules
+   autodoc/**/modules
 
 
 Indices and tables

docs/source/modules.rst

@@ -1,7 +0,0 @@
-bmlsa
-=====
-
-.. toctree::
-   :maxdepth: 4
-
-   bmlsa