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Added check to 'cli.py' to verify '--behave-as' parameter
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Harrison Deng 2023-04-28 11:13:37 -05:00
parent 78b4a74bc8
commit 9eebaa2f91
1 changed files with 4 additions and 0 deletions
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src/bmlsa/cli.py
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@ -39,6 +39,10 @@ def run(args):
args.end_header,
)
if args.behave_as and args.behave_as not in DEFAULT_ALIGNMENT_PARAMETERS:
logger.error('"--behave-as" received bad option.')
exit(1)
scoring_parameter = (
{
"extend_gap_score": args.extend_gap_score,