From 6017eadb2c6f8e87a3883fccf7cb0a08892b2d8b Mon Sep 17 00:00:00 2001
From: Harrison <yunyangdeng@gmail.com>
Date: Fri, 28 Apr 2023 11:30:23 -0500
Subject: [PATCH] Clean sequences of line breaks and carriage return

---
 src/bmlsa/datatypes.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/bmlsa/datatypes.py b/src/bmlsa/datatypes.py
index f007ca6..09a0504 100644
--- a/src/bmlsa/datatypes.py
+++ b/src/bmlsa/datatypes.py
@@ -14,7 +14,7 @@ class AlignedSequence:
         self._end = end
         self._id = id
         self._name = name
-        self._sequence = sequence
+        self._sequence = sequence.replace("\n", "").replace("\r", "")
         self._score = score
 
     @property