Fixed deployed CLI import paths

bmlsa/aligner.py

@@ -1,7 +1,6 @@
 from Bio.Align import PairwiseAligner, substitution_matrices
-from exceptions import UnexpectedAlignmentResult
+from bmlsa.datatypes import AlignedSequence
-
+from bmlsa.exceptions import UnexpectedAlignmentResult
-from datatypes import AlignedSequence
 
 
 def protein_align_many_to_one_ssw(sequence: str, queries: dict[str, AlignedSequence]):

bmlsa/cli.py

@@ -1,9 +1,9 @@
 import os
 import argparse
 from Bio import SeqIO
-from aligner import protein_align_many_to_one_ssw
+from bmlsa.aligner import protein_align_many_to_one_ssw
 
-from persistence import read_annotations_from_csv, save_alignments_to_csv
+from bmlsa.persistence import read_annotations_from_csv, save_alignments_to_csv
 
 
 def main():

bmlsa/persistence.py

@@ -1,5 +1,6 @@
 import csv
-from datatypes import AlignedSequence
+
+from bmlsa.datatypes import AlignedSequence
 
 
 def read_annotations_from_csv(

setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = bmlsa
-version = 0.0.1
+version = 0.0.2
 
 [options]
 packages = bmlsa