From 40c8afe68cbb01cc5a52655866d5d81157d78a78 Mon Sep 17 00:00:00 2001
From: Harrison <yunyangdeng@gmail.com>
Date: Wed, 3 May 2023 08:13:18 -0500
Subject: [PATCH] Updated 'Jenkinsfile' to conform to new build container usage

---
 Jenkinsfile     | 4 ++--
 environment.yml | 3 ++-
 2 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/Jenkinsfile b/Jenkinsfile
index c516826..c18f212 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -3,7 +3,7 @@ pipeline {
     stages {
         stage("install") {
             steps {
-                sh 'mamba env update --file environment.yml || mamba env create --force --file environment.yml'
+                sh 'mamba env update --file environment.yml --prefix ./env || mamba env create --force --file environment.yml --prefix ./env'
                 sh 'echo "mamba activate bmlsa" >> ~/.bashrc'
             }
         }
@@ -19,7 +19,7 @@ pipeline {
                 sh 'rm -rf ./docs/build/*'
                 sh "python -m build"
                 sh 'sphinx-apidoc -o docs/source/autodoc/bmlsa src/bmlsa --force'
-                sh 'make -C docs html'
+                sh 'sphinx-build -M html ./docs/source ./docs/build'
                 publishHTML([allowMissing: false, alwaysLinkToLastBuild: false, keepAll: false, reportDir: 'docs/build/html', reportFiles: 'index.html', reportName: 'Documentation', reportTitles: ''])
             }
         }
diff --git a/environment.yml b/environment.yml
index b14e79d..3979b38 100644
--- a/environment.yml
+++ b/environment.yml
@@ -8,4 +8,5 @@ dependencies:
   - twine=4
   - python-build=0.10.0
   - setuptools=67.6
-  - sphinx=6.2
\ No newline at end of file
+  - sphinx=6.2
+prefix: ./env
\ No newline at end of file