bch441-work-abc-units/scripts/ABC-createRefDB.R
2017-09-25 01:31:40 -04:00

27 lines
859 B
R

# ABC-createRefDB.R
#
# Create a reference protein database for Mbp1-like proteins
#
# Boris Steipe for ABC learning units
#
# For the species, see:
# http://steipe.biochemistry.utoronto.ca/abc/index.php/Reference_species_for_fungi
#
# For the data model, see
# https://docs.google.com/drawings/d/1uupNvz18_FYFwyyVPebTM0CUxcJCPDQuxuIJGpjWQWg
# For the schema, see dbInit() in ./scripts/ABC-dbUtilities.R
#
# ==============================================================================
myDB <- dbInit()
myDB <- dbAddProtein( myDB, fromJSON("./data/MBP1_SACCE.json"))
myDB <- dbAddProtein( myDB, fromJSON("./data/refProteins.json"))
myDB <- dbAddTaxonomy( myDB, fromJSON("./data/refTaxonomy.json"))
myDB <- dbAddFeature( myDB, fromJSON("./data/refFeatures.json"))
myDB <- dbAddAnnotation( myDB, fromJSON("./data/refAnnotations.json"))
# [END]