bch441-work-abc-units/ABC-addSACCE_APSESproteins.R
2017-09-12 16:09:20 -04:00

101 lines
5.2 KiB
R

# addSACCE_APSESproteins.R
# Adds the Saccharomyces cerevisiae APSES proteins to myDB
#
myDB$protein <-
rbind(myDB$protein,
data.frame(
ID = dbAutoincrement(myDB$protein$ID, ns = "ref"),
name = "SWI4_SACCE",
RefSeqID = "NP_011036",
UniProtID = "P25302",
taxonomy.ID = as.integer(4932),
sequence = dbSanitizeSequence("
1 mpfdvlisnq kdntnhqnit pisksvllap hsnhpvieia tysetdvyec yirgfetkiv
61 mrrtkddwin itqvfkiaqf sktkrtkile kesndmqhek vqggygrfqg twipldsakf
121 lvnkyeiidp vvnsiltfqf dpnnpppkrs knsilrktsp gtkitspssy nktprkknss
181 sstsatttaa nkkgkknasi nqpnpsplqn lvfqtpqqfq vnssmnimnn ndnhttmnfn
241 ndtrhnlinn isnnsnqsti iqqqksihen sfnnnysatq kplqffpipt nlqnknvaln
301 npnnndsnsy shnidnvins snnnnngnnn nliivpdgpm qsqqqqqhhh eyltnnfnhs
361 mmdsitngns kkrrkklnqs neqqfynqqe kiqrhfklmk qpllwqsfqn pndhhneycd
421 sngsnnnnnt vasngssiev fssnendnsm nmssrsmtpf sagntssqnk lenkmtdqey
481 kqtiltilss erssdvdqal latlypapkn fninfeiddq ghtplhwata maniplikml
541 itlnanalqc nklgfncitk sifynncyke nafdeiisil kiclitpdvn grlpfhylie
601 lsvnksknpm iiksymdsii lslgqqdynl lkiclnyqdn igntplhlsa lnlnfevynr
661 lvylgastdi lnldnespas imnkfntpag gsnsrnnntk adrklarnlp qknyyqqqqq
721 qqqpqnnvki pkiiktqhpd kedstadvni aktdsevnes qylhsnqpns tnmntimedl
781 sninsfvtss vikdikstps kilenspily rrrsqsisde kekakdnenq vekkkdplns
841 vktampsles pssllpiqms plgkyskpls qqinklntkv sslqrimgee iknldnevve
901 tessisnnkk rlitiahqie dafdsvsnkt pinsisdlqs riketsskln sekqnfiqsl
961 eksqalklat ivqdeeskvd mntnssshpe kqedeepipk stsetsspkn tkadakfsnt
1021 vqesydvnet lrlateltil qfkrrmttlk iseakskins svkldkyrnl igitienids
1081 klddiekdlr ana"),
stringsAsFactors = FALSE))
myDB$protein <-
rbind(myDB$protein,
data.frame(
ID = dbAutoincrement(myDB$protein$ID, ns = "ref"),
name = "PHD1_SACCE",
RefSeqID = "NP_012881",
UniProtID = "P36093",
taxonomy.ID = as.integer(4932),
sequence = dbSanitizeSequence("
1 myhvpemrlh yplvntqsna aitptrsydn tlpsfnelsh qstinlpfvq retpnayanv
61 aqlatsptqa ksgyycryya vpfptypqqp qspyqqavlp yatipnsnfq pssfpvmavm
121 ppevqfdgsf lntlhphtel ppiiqntndt svarpnnlks iaaasptvta ttrtpgvsst
181 svlkprvitt mwedenticy qveangisvv rradnnming tkllnvtkmt rgrrdgilrs
241 ekvrevvkig smhlkgvwip ferayilaqr eqildhlypl fvkdiesivd arkpsnkasl
301 tpksspapik qepsdnkhei ateikpksid alsngastqg agelphlkin hidteaqtsr
361 aknels"),
stringsAsFactors = FALSE))
myDB$protein <-
rbind(myDB$protein,
data.frame(
ID = dbAutoincrement(myDB$protein$ID, ns = "ref"),
name = "SOK2_SACCE",
RefSeqID = "NP_013729",
UniProtID = "P53438",
taxonomy.ID = as.integer(4932),
sequence = dbSanitizeSequence("
1 mpignpintn diksnrmrqe snmsavsnse stigqstqqq qqqqqylgqs vqplmpvsyq
61 yvvpeqwpyp qyyqqpqsqs qqqlqsqpqm yqvqesfqss gsdsnasnpp stsvgvpsna
121 tatalpngsa ittkksnnst nisnnvpyyy yfpqmqaqqs maysypqayy yypangdgtt
181 ngatpsvtsn qvqnpnlekt ystfeqqqqh qqqqqlqaqt ypaqppkign afskfsksgp
241 psdsssgsms pnsnrtsrns nsisslaqqp pmsnypqpst yqypgfhkts sipnshspip
301 prslttptqg ptsqngplsy nlpqvgllpp qqqqqvsply dgnsitppvk pstdqetylt
361 anrhgvsdqq ydsmaktmns fqtttirhpm pliattnatg sntsgtsasi irprvtttmw
421 edektlcyqv eangisvvrr adndmvngtk llnvtkmtrg rrdgilkaek irhvvkigsm
481 hlkgvwipfe ralaiaqrek iadylyplfi rdiqsvlkqn npsndsssss sstgiksisp
541 rtyyqpinny qnpngpsnis aaqltyssmn lnnkiipnns ipavstiaag ekplkkctmp
601 nsnqleghti tnlqtlsatm pmkqqlmgni asplsyprna tmnsastlgi tpadskpltp
661 sptttntnqs sesnvgsiht gitlprvese sashskwske adsgntvpdn qtlkeprssq
721 lpisaltstd tdkiktstsd eatqpnepse aepvkesess ksqvdgagdv sneeiaaddt
781 kkqek"),
stringsAsFactors = FALSE))
myDB$protein <-
rbind(myDB$protein,
data.frame(
ID = dbAutoincrement(myDB$protein$ID, ns = "ref"),
name = "XBP1_SACCE",
RefSeqID = "NP_012165",
UniProtID = "P40489",
taxonomy.ID = as.integer(4932),
sequence = dbSanitizeSequence("
1 mkypafsins dtvhltdnpl ddyqrlylvs vldrdsppas fsaglnirkv nykssiaaqf
61 thpnfiisar dagngeeaaa qnvlncfeyq fpnlqtiqsl vheqtllsql assatphsal
121 hlhdknilmg kiilpsrsnk tpvsasptkq ekkalstasr enatssltkn qqfkltkmdh
181 nlindklinp nncviwshds gyvfmtgiwr lyqdvmkgli nlprgdsvst sqqqffckae
241 fekilsfcfy nhssftsees ssvllsssts sppkrrtstg stfldanass sstsstqann
301 yidfhwnnik pelrdlicqs ykdflinelg pdqidlpnln panftkrirg gyikiqgtwl
361 pmeisrllcl rfcfpiryfl vpifgpdfpk dceswylahq nvtfassttg agaataataa
421 antstnftst avarprqkpr prprqrstsm shskaqklvi edalpsfdsf venlglssnd
481 knfikknskr qksstytsqt sspigprdpt vqilsnlasf ynthghrysy pgniyipqqr
541 yslpppnqls spqrqlnyty dhihpvpsqy qsprhynvps spiapapptf pqpygddhyh
601 flkyasevyk qqnqrpahnt ntnmdtsfsp rannslnnfk fktnskq"),
stringsAsFactors = FALSE))
# [END]