31 lines
1016 B
R
31 lines
1016 B
R
# ABC-createRefDB.R
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#
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# Create a reference protein database for Mbp1-like proteins
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#
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# Boris Steipe for ABC learning units
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#
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# For the species, see:
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# http://steipe.biochemistry.utoronto.ca/abc/index.php/Reference_species_for_fungi
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#
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# For the data model, see
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# https://docs.google.com/presentation/d/13vWaVcFpWEOGeSNhwmqugj2qTQuH1eZROgxWdHGEMr0
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# For the schema, see dbInit() in ./scripts/ABC-dbUtilities.R
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#
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# ==============================================================================
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myDB <- dbInit()
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myDB <- dbAddProtein(myDB, jsonlite::fromJSON("./data/MBP1_SACCE.json"))
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myDB <- dbAddProtein(myDB, jsonlite::fromJSON("./data/refMBP1Proteins.json"))
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myDB <- dbAddProtein(myDB, jsonlite::fromJSON("./data/refAPSES_PSI-BLAST.json"))
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myDB <- dbAddTaxonomy(myDB, jsonlite::fromJSON("./data/refTaxonomy.json"))
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myDB <- dbAddFeature(myDB, jsonlite::fromJSON("./data/refFeatures.json"))
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myDB <- dbAddAnnotation( myDB, jsonlite::fromJSON("./data/refAnnotations.json"))
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# [END]
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