# Miscellaneous
.Ds_store
instructor/
dev/
# myScripts/ # We don't want to ignore this so we can save our work to our own fork.

# History files
.Rhistory
.Rapp.history

# Session Data files
# .RData

# Files produced in assingments
data/APSESphyloSet.mfa
data/APSEStreeRproml.rds

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
/*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md
.Rproj.user