Commit Graph

18 Commits

Author SHA1 Message Date
hyginn
f48b6bf3b7 add constants AAVALID; NUCVALID, NUCAMBIG. add AACOLS; add validateFA(); readFASTA; writeFASTA. 2020-09-24 18:43:44 +10:00
hyginn
76b18a8a35 Update PPI-Analysis assets and code 2020-09-23 20:47:26 +10:00
hyginn
42ad74b2f2 Changed 1 to 3 2020-09-23 14:13:52 +10:00
hyginn
67c92a49d9 change validation logic in selectPDBrep() and add seal() 2020-09-22 13:02:10 +10:00
hyginn
cfbfee9dba add digest:: and jsonlite::, and sameSpecies(), 2020-09-21 21:34:45 +10:00
hyginn
7536473c5d Updated MYSPE data and entire workflow. Changed all .RData to .rds 2020-09-21 14:28:24 +10:00
hyginn
37ef655d47 2020 updates - deactivate for maintenance 2020-09-18 21:56:30 +10:00
hyginn
bae2d33f14 Prefix Biostrings:: to subseq() 2019-11-14 22:38:53 -05:00
hyginn
1dd87e7473 Maintainance fixes and UniProt API change bugfix 2018-10-30 21:27:42 -04:00
hyginn
7cc2853d00 add fetchMSAmotif() function 2017-11-01 09:43:48 -04:00
hyginn
553b042f20 MSA unit, and supporting files 2017-10-28 23:09:21 -04:00
hyginn
b748c1264c Add selectPDBrep() function to select random, representative PDB IDs 2017-10-21 21:00:18 -04:00
hyginn
c148d95071 updates to biCode() function - handle NA and short input 2017-10-15 18:44:06 -04:00
hyginn
4fb2506e58 refactor biCode to bring it in line with current coding standards 2017-10-06 08:49:10 -04:00
hyginn
e1679d8d07 Update for dbUtilities 2017-09-25 01:29:43 -04:00
hyginn
ad783c1254 Added BLAST wait-timer 2017-09-21 17:49:15 -04:00
hyginn
1bb04b8bec Added and updated learning units 2017-09-12 16:09:20 -04:00
hyginn
7c47af1b3d Install files and folders 2017-08-18 22:04:01 +02:00